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SCNpilot_expt_1000_bf_scaffold_2124

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2124_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..226
DNA (225bp) protein (75aa)
glutathione S-transferase domain; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Sphingomonas elodea RepID=UPI0002631E59
Glutathione S-transferase {ECO:0000313|EMBL:AJP72966.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2124_2
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

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comp(303..1247)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036C0BF2 rbh
metal-dependent hydrolase; K07045
Tax=BJP_IG2158_Zixibacteria_48_33
SCNpilot_expt_1000_bf_scaffold_2124_3
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1418..1615)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3J7V1_9RHIZ
Fe-S oxidoreductase {ECO:0000313|EMBL:KJS25542.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
hypothetical protein; K06938
SCNpilot_expt_1000_bf_scaffold_2124_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1612..2127)
DNA (516bp) protein (172aa)
thiol-disulfide isomerase n=1 Tax=Sphingomonas elodea RepID=UPI00026308EB
Thiol-disulfide isomerase {ECO:0000313|EMBL:AIT06666.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
thiol-disulfide isomerase
SCNpilot_expt_1000_bf_scaffold_2124_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2124..3530)
DNA (1407bp) protein (469aa)
DEAD/DEAH box helicase n=1 Tax=Sphingomonas elodea RepID=UPI0002631E57 rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:AJP72964.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
DEAD/DEAH box helicase rbh
SCNpilot_expt_1000_bf_scaffold_2124_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3605..4090)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F28F7D
Uncharacterized protein {ECO:0000313|EMBL:AJP72963.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2124_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4125..5570
DNA (1446bp) protein (482aa)
D-2-hydroxyacid dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002631E55 rbh
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:AJP72962.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative dehydrogenase/oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2124_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5625..6407
DNA (783bp) protein (261aa)
multidrug transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002631E54 rbh
Multidrug transporter {ECO:0000313|EMBL:AJP72961.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SapC-like protein rbh
SCNpilot_expt_1000_bf_scaffold_2124_9
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6410..6955
DNA (546bp) protein (182aa)
cytochrome B561 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B53CB6
Prokaryotic cytochrome b561 family protein {ECO:0000313|EMBL:EZP55523.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
cytochrome B561; K12262 cytochrome b561
SCNpilot_expt_1000_bf_scaffold_2124_10
unknown

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7181..7765
DNA (585bp) protein (195aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2124_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7780..8664)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000301698E rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:AJP72960.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
N-formylglutamate amidohydrolase
SCNpilot_expt_1000_bf_scaffold_2124_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8740..9114
DNA (375bp) protein (125aa)
response regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631E52
Response regulator {ECO:0000313|EMBL:AJP74568.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
response regulator receiver protein; K13589 two-component system, cell cycle response regulator CpdR
SCNpilot_expt_1000_bf_scaffold_2124_13
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9384..10205
DNA (822bp) protein (274aa)
Type 11 methyltransferase n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HXH4_9GAMM
Type 11 methyltransferase {ECO:0000313|EMBL:ERS14758.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. PN-3.;"
type 11 methyltransferase
SCNpilot_expt_1000_bf_scaffold_2124_14
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10327..11634)
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E5EB66 rbh
methyl-accepting chemotaxis sensory transducer rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_1000_bf_scaffold_2124_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11792..12412
DNA (621bp) protein (207aa)
ferrichrome ABC transporter ATP-binding protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031D4462
ABC transporter {ECO:0000313|EMBL:AJP72882.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2124_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12514..14010
DNA (1497bp) protein (499aa)
methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] rbh
methylmalonate-semialdehyde dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI00035E61F4 rbh
Sphingomonas taxi strain 30a NODE_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28331.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_1000_bf_scaffold_2124_17
unknown

Not on your lists

14015..14380
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2124_18
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14433..15227)
DNA (795bp) protein (265aa)
Sterol desaturase family protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WDT6_9SPHN
fatty acid hydroxylase
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_1000_bf_scaffold_2124_19
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15321..15965)
DNA (645bp) protein (215aa)
Transcriptional regulatory protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WDT7_9SPHN
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_1000_bf_scaffold_2124_20
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16420..17022
DNA (603bp) protein (201aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC9BD
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Displaying 20 items

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