ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2317

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2317_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..590
DNA (588bp) protein (196aa)
glutathione S-transferase n=1 Tax=Pseudomonas nitroreducens RepID=UPI000363CFDA
Glutathione S-transferase-like protein {ECO:0000313|EMBL:KGB54916.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
glutathione S-transferase
SCNpilot_expt_1000_bf_scaffold_2317_2
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(684..962)
DNA (279bp) protein (93aa)
cold-shock protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A400
Putative membrane protein {ECO:0000313|EMBL:EJK78295.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2317_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1044..1580)
DNA (537bp) protein (179aa)
putative outer membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI000263075C
opacity protein and related surface antigens-like protein
Opacity protein and related surface antigens-like protein {ECO:0000313|EMBL:AGH50049.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_2317_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1798..2073
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP71009.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2317_5
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2178..2897
DNA (720bp) protein (240aa)
scoA; 3-oxoacid CoA-transferase subunit A; K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000363FD42 rbh
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_expt_1000_bf_scaffold_2317_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2894..3964
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036F0826 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP74218.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
acid phosphatase class B
SCNpilot_expt_1000_bf_scaffold_2317_7
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3961..4281
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGG0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAT09895.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
SCNpilot_expt_1000_bf_scaffold_2317_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4285..4935
DNA (651bp) protein (217aa)
scoB; 3-oxoacid CoA-transferase subunit B; K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] rbh
3-oxoacid CoA-transferase subunit B {ECO:0000313|EMBL:BAK66311.1}; EC=2.8.3.5 {ECO:0000313|EMBL:BAK66311.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-oxoacid CoA-transferase subunit B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISF1_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2317_9
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5014..5697
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630CC7 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO40220.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2317_10
unknown

Not on your lists

5883..6101
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2317_11
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6122..7084
DNA (963bp) protein (321aa)
oxidoreductase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031AB5AD rbh
Oxidoreductase {ECO:0000313|EMBL:EQB33019.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_expt_1000_bf_scaffold_2317_12
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7168..8004
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002893944
Uncharacterized protein {ECO:0000313|EMBL:EJZ21752.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2317_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8082..9524
DNA (1443bp) protein (481aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
isopropylmalate isomerase large subunit (EC:4.2.1.33)
isopropylmalate isomerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DD5BAC rbh
SCNpilot_expt_1000_bf_scaffold_2317_14
unknown

Not on your lists

9536..9652
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2317_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9671..10300
DNA (630bp) protein (210aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33) rbh
isopropylmalate isomerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FD2938 rbh
SCNpilot_expt_1000_bf_scaffold_2317_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10534..11241
DNA (708bp) protein (236aa)
NADPH:quinone oxidoreductase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288091B
NADPH:quinone oxidoreductase {ECO:0000313|EMBL:AJP74220.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
zinc-binding alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2317_17
unknown

Not on your lists

11575..11925
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2317_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12222..12545
DNA (324bp) protein (108aa)
aldolase n=1 Tax=Sphingomonas elodea RepID=UPI0002630A3D
Aldolase {ECO:0000313|EMBL:AJP71015.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2317_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12545..12784
DNA (240bp) protein (80aa)
ATP-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FA6DE6
ATP-binding protein {ECO:0000313|EMBL:AJP71016.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
BolA family protein
SCNpilot_expt_1000_bf_scaffold_2317_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12790..13116
DNA (327bp) protein (109aa)
monothiol glutaredoxin n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F72A87
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894, ECO:0000313|EMBL:AJP71017.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glutaredoxin-like protein
SCNpilot_expt_1000_bf_scaffold_2317_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13754..14122
DNA (369bp) protein (123aa)
beta-lactamase n=1 Tax=Sphingomonas elodea RepID=UPI0002630A3A
CopY family transcriptional repressor {ECO:0000313|EMBL:AJP71069.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
BlaI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2317_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14119..14991
DNA (873bp) protein (291aa)
peptidase M56 family protein, partial n=1 Tax=Sphingomonas elodea RepID=UPI0002630A39 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP71070.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M56 family protein
SCNpilot_expt_1000_bf_scaffold_2317_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14940..15650
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036B3EA4
Uncharacterized protein {ECO:0000313|EMBL:AJP71070.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2317_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15793..16029
DNA (237bp) protein (79aa)
Beta-lactamase n=3 Tax=Sphingobium RepID=T0I1A4_9SPHN
Beta-lactamase {ECO:0000313|EMBL:AJP71071.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative hydrolase/glyoxylase
Displaying 24 items

View Taxonomy