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SCNpilot_expt_1000_bf_scaffold_2348

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2348_1
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..307)
DNA (306bp) protein (102aa)
ptrB; oligopeptidase B (EC:3.4.21.83); K01354 oligopeptidase B [EC:3.4.21.83]
peptidase n=1 Tax=Sphingomonas elodea RepID=UPI0002630FE2
Protease II {ECO:0000313|EMBL:EJK86100.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
SCNpilot_expt_1000_bf_scaffold_2348_2
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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792..2021
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7Z8Y3_9XANT
Uncharacterized protein {ECO:0000313|EMBL:ETC86550.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
SCNpilot_expt_1000_bf_scaffold_2348_3
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2041..2313
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WGR6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ79466.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_1000_bf_scaffold_2348_4
unknown

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comp(2732..2965)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2348_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3160..4365)
DNA (1206bp) protein (402aa)
ATP-dependent protease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DC8614 rbh
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
SCNpilot_expt_1000_bf_scaffold_2348_6
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4470..5651)
DNA (1182bp) protein (394aa)
D-amino acid oxidase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGA7_9SPHN rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:KGB53690.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
FAD dependent oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_2348_7
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5704..6093)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD004
Uncharacterized protein {ECO:0000313|EMBL:KFL48463.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
SCNpilot_expt_1000_bf_scaffold_2348_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6086..6724)
DNA (639bp) protein (213aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
peptidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EA9027 rbh
SCNpilot_expt_1000_bf_scaffold_2348_9
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7164..9767
DNA (2604bp) protein (868aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003760655 rbh
DNA, contig: SP635 {ECO:0000313|EMBL:GAN14272.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TonB-dependent outer membrane receptor rbh
SCNpilot_expt_1000_bf_scaffold_2348_10
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9846..11654
DNA (1809bp) protein (603aa)
F5/8 type C domain protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QLR9_9CAUL rbh
F5/8 type C domain protein {ECO:0000313|EMBL:EGF92338.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
coagulation factor 5/8 type domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2348_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11690..13123)
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036EB192 rbh
Sphingomonas taxi strain 30a NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30103.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2348_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13280..14296)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030FDFB7 rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:AJP71647.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2348_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14488..16773
DNA (2286bp) protein (762aa)
exported beta-glucosidase; K05349 beta-glucosidase [EC:3.2.1.21] rbh
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003652144 rbh
Periplasmic beta-glucosidase {ECO:0000313|EMBL:EZP54205.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_1000_bf_scaffold_2348_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16809..17627)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003008E34 rbh
Sphingomonas taxi strain 30a NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30106.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
sugar (glycoside-pentoside-hexuronide) transporter; K03292 glycoside/pentoside/hexuronide:cation symporter, GPH family
Displaying 14 items

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