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SCNpilot_expt_1000_bf_scaffold_2519

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2519_1
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1196
DNA (1194bp) protein (398aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Two component sensor histidine kinase, AdeS n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRP3_TISMK
baeS; two component sensor histidine kinase, AdeS
SCNpilot_expt_1000_bf_scaffold_2519_2
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1671..2060
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EXE3_MODMB
Membrane protein {ECO:0000313|EMBL:KHL10582.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2519_3
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


2700..4541
DNA (1842bp) protein (614aa)
Methionine--tRNA ligase (EC:6.1.1.10) rbh
Methionine--tRNA ligase n=3 Tax=Bacillus cereus RepID=C2U4T1_BACCE rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO82585.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
SCNpilot_expt_1000_bf_scaffold_2519_4
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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4538..7750
DNA (3213bp) protein (1071aa)
Non-ribosomal peptide synthase/amino acid adenylation enzyme n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WBL7_9CYAN
non-ribosomal peptide synthase/amino acid adenylation enzyme
Non-ribosomal peptide synthase/amino acid adenylation enzyme {ECO:0000313|EMBL:AFZ17608.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
SCNpilot_expt_1000_bf_scaffold_2519_5
Pseudomonas avellanae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7777..9114
DNA (1338bp) protein (446aa)
L-lysine 6-monooxygenase n=1 Tax=Pseudomonas avellanae BPIC 631 RepID=K2SX15_9PSED rbh
L-lysine 6-monooxygenase {ECO:0000313|EMBL:EKG31786.1}; TaxID=1154758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas avellanae BPIC 631.;"
L-lysine 6-monooxygenase rbh
SCNpilot_expt_1000_bf_scaffold_2519_6
Bacillus thuringiensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9129..9941
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Bacillus thuringiensis serovar huazhongensis BGSC 4BD1 RepID=C3HBK0_BACTU
Uncharacterized protein {ECO:0000313|EMBL:EEM80113.1}; TaxID=527030 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus thuringiensis serovar huazhongensis BGSC 4BD1.;"
SC9B5.02; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2519_7
Cyanothece sp. PCC 7424, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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10029..11621
DNA (1593bp) protein (531aa)
choline dehydrogenase (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1] rbh
Choline dehydrogenase {ECO:0000313|EMBL:ACK73068.1}; EC=1.1.99.1 {ECO:0000313|EMBL:ACK73068.1};; TaxID=65393 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7424) (Synechococcus sp. (strain ATCC; 29155)).;"
Choline dehydrogenase n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KBU0_CYAP7 rbh
SCNpilot_expt_1000_bf_scaffold_2519_8
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11618..12934
DNA (1317bp) protein (439aa)
Diaminobutyrate--2-oxoglutarate aminotransferase {ECO:0000313|EMBL:KCZ99378.1}; EC=2.6.1.76 {ECO:0000313|EMBL:KCZ99378.1};; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
diaminobutyrate--2-oxoglutarate aminotransferase; K00836 diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
Diaminobutyrate--2-oxoglutarate aminotransferase n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KTM5_9GAMM
SCNpilot_expt_1000_bf_scaffold_2519_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12941..13981
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003607A95
putative oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2519_10
Pseudomonas viridiflava, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13978..14949
DNA (972bp) protein (324aa)
ethanolamine utilization protein EutN n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037C961D
Strain LMCA8 contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36417.1}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas viridiflava.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2519_11
unknown

Not on your lists

14949..15725
DNA (777bp) protein (259aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2519_12
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15815..16636)
DNA (822bp) protein (274aa)
PAS/PAC sensor signal transduction histidine kinase; K14986 two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
Putative FixL oxygen regulated histidine kinase n=1 Tax=uncultured bacterium 1062 RepID=B8R8Y9_9BACT
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_1000_bf_scaffold_2519_13
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16809..17222
DNA (414bp) protein (138aa)
Transcriptional regulator, AraC family n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MIS0_PSEPS
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ELS27451.1}; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
putative AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2519_14
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17170..17895
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036E2BEE
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ELS27451.1}; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
putative AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2519_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18029..19045
DNA (1017bp) protein (339aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01962, ECO:0000313|EMBL:AJP71842.1}; Short=ADE {ECO:0000256|HAMAP-Rule:MF_01962};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01962};; Adenine aminohydrolase {ECO:0000256|HAMAP-Rule:MF_01962}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
adenosine deaminase; K01488 adenosine deaminase [EC:3.5.4.4] rbh
adenosine deaminase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FAAF05 rbh
SCNpilot_expt_1000_bf_scaffold_2519_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19042..19542
DNA (501bp) protein (167aa)
phosphoribosyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI000263028F
Phosphoribosyltransferase {ECO:0000313|EMBL:AJP71843.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphoribosyltransferase; K07101
SCNpilot_expt_1000_bf_scaffold_2519_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19665..20261
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030158C8
Uncharacterized protein {ECO:0000313|EMBL:AJP71844.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2519_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20487..23039)
DNA (2553bp) protein (851aa)
preprotein translocase subunit SecA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E95968 rbh
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
preprotein translocase subunit SecA
SCNpilot_expt_1000_bf_scaffold_2519_19
unknown

Not on your lists

comp(23342..23521)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2519_20
unknown

Not on your lists

comp(23756..24061)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2519_21
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24150..24623)
DNA (474bp) protein (158aa)
TonB-like protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3Z9_9SPHN
TonB-like protein {ECO:0000313|EMBL:EGD60677.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_expt_1000_bf_scaffold_2519_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24862..26088
DNA (1227bp) protein (409aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein (EC:2.3.1.35) rbh
N-acetylglutamate synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DF58BD rbh
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2519_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26251..26595)
DNA (345bp) protein (115aa)
thioredoxin n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FB9462
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077, ECO:0000313|EMBL:AJP71850.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
thioredoxin; K03671 thioredoxin 1
SCNpilot_expt_1000_bf_scaffold_2519_24
unknown

Not on your lists

26876..27568
DNA (693bp) protein (231aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2519_25
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27635..27994
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MVS9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19667.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
SCNpilot_expt_1000_bf_scaffold_2519_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27918..28898)
DNA (981bp) protein (327aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
DNA helicase UvrD n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EF58E3
double-strand break repair helicase AddA
SCNpilot_expt_1000_bf_scaffold_2519_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30078..32276)
DNA (2199bp) protein (733aa)
helicase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FA7F49 rbh
Helicase {ECO:0000313|EMBL:AJP71852.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
double-strand break repair protein AddB
Displaying 27 items

View Taxonomy