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SCNpilot_expt_1000_bf_scaffold_2722

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2722_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(182..850)
DNA (669bp) protein (223aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas melonis RepID=UPI00036A140E
TonB-dependent receptor {ECO:0000313|EMBL:AJP71420.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_2722_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1099..1569
DNA (471bp) protein (157aa)
heat-shock protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000363624B
Heat-shock protein {ECO:0000313|EMBL:AJP71419.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ibpA; molecular chaperone IbpA; K04080 molecular chaperone IbpA
SCNpilot_expt_1000_bf_scaffold_2722_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1913..3760)
DNA (1848bp) protein (616aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F0102A rbh
Chemotaxis protein {ECO:0000313|EMBL:AJP71063.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
methyl-accepting chemotaxis sensory transducer rbh
SCNpilot_expt_1000_bf_scaffold_2722_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3961..4674)
DNA (714bp) protein (238aa)
peptidylprolyl isomerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036ECED4
Peptidylprolyl isomerase {ECO:0000313|EMBL:AJP71746.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_1000_bf_scaffold_2722_5
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4705..5268)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD05B4
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_2722_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5452..7101)
DNA (1650bp) protein (550aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D92576
SCNpilot_expt_1000_bf_scaffold_2722_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7157..7549)
DNA (393bp) protein (131aa)
preprotein translocase subunit SecG n=1 Tax=Sphingomonas elodea RepID=UPI0002631DC1
Preprotein translocase subunit SecG {ECO:0000313|EMBL:AJP71417.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
secG; protein-export membrane protein SecG; K03075 preprotein translocase subunit SecG
SCNpilot_expt_1000_bf_scaffold_2722_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7756..8106
DNA (351bp) protein (117aa)
MarR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631DC0
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13156.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
regulatory protein MarR
SCNpilot_expt_1000_bf_scaffold_2722_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8225..9349
DNA (1125bp) protein (375aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] rbh
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DBE rbh
SCNpilot_expt_1000_bf_scaffold_2722_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9751..11208
DNA (1458bp) protein (486aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] rbh
glucose 6-phosphate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036530BD rbh
SCNpilot_expt_1000_bf_scaffold_2722_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11360..12067
DNA (708bp) protein (236aa)
6-phosphogluconolactonase (EC:3.1.1.31); K01057 6-phosphogluconolactonase [EC:3.1.1.31] rbh
6-phosphogluconolactonase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B34AC3 rbh
6-phosphogluconolactonase {ECO:0000313|EMBL:AJP71413.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2722_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12082..13902
DNA (1821bp) protein (607aa)
phosphogluconate dehydratase (EC:4.2.1.12)
phosphogluconate dehydratase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DBC rbh
Phosphogluconate dehydratase {ECO:0000313|EMBL:AJP71412.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2722_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14051..15019
DNA (969bp) protein (323aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
glucokinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000312FC88 rbh
Glucokinase {ECO:0000313|EMBL:AJP71411.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2722_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15016..15624
DNA (609bp) protein (203aa)
2-keto-3-deoxy-phosphogluconate aldolase (EC:4.1.2.14); K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
ketohydroxyglutarate aldolase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DBA rbh
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:GAL99506.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_1000_bf_scaffold_2722_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15653..16258
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZS9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48033.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K06886 hemoglobin
SCNpilot_expt_1000_bf_scaffold_2722_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16267..17769)
DNA (1503bp) protein (501aa)
peptidase S10 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030E0CAA rbh
Peptidase S10 family protein {ECO:0000313|EMBL:GAO40501.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
peptidase S10 serine carboxypeptidase rbh
SCNpilot_expt_1000_bf_scaffold_2722_17
unknown

Not on your lists

18443..19117
DNA (675bp) protein (225aa)
glycine cleavage t protein (aminomethyl transferase) n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCBD7
SCNpilot_expt_1000_bf_scaffold_2722_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18975..20234)
DNA (1260bp) protein (420aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447, ECO:0000313|EMBL:AJP71408.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
fabF; 3-oxoacyl-ACP synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-ACP synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DB2 rbh
SCNpilot_expt_1000_bf_scaffold_2722_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20402..20650)
DNA (249bp) protein (83aa)
acyl carrier protein n=1 Tax=Sphingomonas RepID=UPI0002631DB1
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
acpP; acyl carrier protein; K02078 acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_2722_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20752..21288)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002ECA476
Uncharacterized protein {ECO:0000313|EMBL:AJP71406.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2722_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21317..22054)
DNA (738bp) protein (246aa)
3-oxoacyl-ACP synthase n=1 Tax=Sphingomonas elodea RepID=UPI00017092CC rbh
FabG protein {ECO:0000313|EMBL:GAN13172.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
3-oxoacyl-ACP reductase rbh
SCNpilot_expt_1000_bf_scaffold_2722_22
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22077..22493)
DNA (417bp) protein (139aa)
Fe3+ hydroxamate ABC transporter substrate-binding protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA08E
Fe3+ hydroxamate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG89719.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
Fe3+-hydroxamate ABC transporter periplasmic protein
SCNpilot_expt_1000_bf_scaffold_2722_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22548..22865)
DNA (318bp) protein (106aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ACP S-malonyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FD2216
malonyl CoA-acyl carrier protein transacylase
SCNpilot_expt_1000_bf_scaffold_2722_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22865..23323)
DNA (459bp) protein (153aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ACP S-malonyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DAE
malonyl CoA-acyl carrier protein transacylase
Displaying 24 items

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