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SCNpilot_expt_1000_bf_scaffold_2758

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2758_1
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..289)
DNA (288bp) protein (96aa)
chemotaxis protein CheY, partial n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B51E20
Transcriptional regulatory protein TdiR {ECO:0000313|EMBL:GAO32558.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
fixJ; response regulator FixJ; K14987 two-component system, LuxR family, response regulator FixJ
SCNpilot_expt_1000_bf_scaffold_2758_2
Paenibacillus sp. FSL R7-277, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(425..1972)
DNA (1548bp) protein (516aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1227352 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-277.;"
Sensory box histidine kinase/response regulator n=1 Tax=Alteromonas sp. (strain SN2) RepID=F5ZCL1_ALTSS
sensory box histidine kinase/response regulator
SCNpilot_expt_1000_bf_scaffold_2758_3
unknown

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comp(1974..2753)
DNA (780bp) protein (260aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2758_4
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2823..3251)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003810D82
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54323.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_2758_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3248..5326)
DNA (2079bp) protein (693aa)
Conjugal transfer coupling protein TraG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5H9_9SPHN
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:ENY82802.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_expt_1000_bf_scaffold_2758_6
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5853..6863)
DNA (1011bp) protein (337aa)
Ricin B lectin n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZ82_TERSS rbh
ricin B lectin rbh
Ricin B lectin {ECO:0000313|EMBL:ADV82100.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_expt_1000_bf_scaffold_2758_7
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6901..8382)
DNA (1482bp) protein (494aa)
Glycosyl hydrolases family 28 n=1 Tax=Caulobacter sp. AP07 RepID=J2QCU6_9CAUL rbh
Glycosyl hydrolases family 28 {ECO:0000313|EMBL:EJL37952.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
endo-polygalacturonase
SCNpilot_expt_1000_bf_scaffold_2758_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8452..11355)
DNA (2904bp) protein (968aa)
TonB-dependent receptor n=1 Tax=Caulobacter sp. AP07 RepID=J2HQ29_9CAUL rbh
TonB-dependent receptor {ECO:0000313|EMBL:EJL37953.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2758_9
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11516..12436)
DNA (921bp) protein (307aa)
ROK family protein; K00847 fructokinase [EC:2.7.1.4]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I377_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB19767.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_1000_bf_scaffold_2758_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12564..14312
DNA (1749bp) protein (583aa)
Beta-xylosidase n=1 Tax=Caulobacter sp. AP07 RepID=J3A514_9CAUL rbh
Beta-xylosidase {ECO:0000313|EMBL:EJL26114.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
glycoside hydrolase
SCNpilot_expt_1000_bf_scaffold_2758_11
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14319..15407)
DNA (1089bp) protein (363aa)
Transcriptional regulator, LacI family n=1 Tax=Cellvibrio sp. BR RepID=I3I4I7_9GAMM rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EIK42972.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2758_12
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15662..16915
DNA (1254bp) protein (418aa)
Oligosaccharide:H+ symporter n=1 Tax=Caulobacter sp. AP07 RepID=J3A509_9CAUL rbh
Oligosaccharide:H+ symporter {ECO:0000313|EMBL:EJL26109.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
Lactose permease Lac Y; K02532 MFS transporter, OHS family, lactose permease rbh
Displaying 12 items

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