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SCNpilot_expt_1000_bf_scaffold_2780

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2780_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1338)
DNA (1338bp) protein (446aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
cysteinyl-tRNA synthetase n=1 Tax=Sphingomonas elodea RepID=UPI0002630684 rbh
SCNpilot_expt_1000_bf_scaffold_2780_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1454..1672)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630686
Uncharacterized protein {ECO:0000313|EMBL:AJP71518.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2780_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2095..2772
DNA (678bp) protein (226aa)
protein-L-isoaspartate O-methyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037ABC69 rbh
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:AJP74322.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
protein-L-isoaspartate O-methyltransferase
SCNpilot_expt_1000_bf_scaffold_2780_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2787..4388
DNA (1602bp) protein (534aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000300C1FF rbh
Membrane protein {ECO:0000313|EMBL:AJP71520.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
outer membrane channel protein TolC; K12340 outer membrane channel protein
SCNpilot_expt_1000_bf_scaffold_2780_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4425..4916
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC9E
Uncharacterized protein {ECO:0000313|EMBL:AJP71521.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K09991 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2780_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5038..7107
DNA (2070bp) protein (690aa)
peptidase S9 n=1 Tax=Sphingomonas elodea RepID=UPI000263068B rbh
Peptidase S9 {ECO:0000313|EMBL:AJP71522.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase S9 prolyl oligopeptidase rbh
SCNpilot_expt_1000_bf_scaffold_2780_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7190..9925
DNA (2736bp) protein (912aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
valS; valyl-tRNA ligase (EC:6.1.1.9) rbh
valyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FD7E82 rbh
SCNpilot_expt_1000_bf_scaffold_2780_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10089..11129
DNA (1041bp) protein (347aa)
PEP-CTERM putative exosortase interaction domain-containing protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GD66_9SPHN rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:AJP71524.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2780_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11202..11597
DNA (396bp) protein (132aa)
multidrug transporter MatE n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000289D1C8
Multidrug transporter MatE {ECO:0000313|EMBL:AJP71526.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MATE efflux family protein
Displaying 9 items

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