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SCNpilot_expt_1000_bf_scaffold_2875

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2875_1
unknown

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comp(46..183)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2875_2
unknown

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comp(439..1293)
DNA (855bp) protein (285aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2875_3
unknown

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comp(1342..1494)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2875_4
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1610..1876
DNA (267bp) protein (89aa)
XRE family transcriptional regulator n=1 Tax=Sphingobium indicum B90A RepID=I5BA51_9SPHN
XRE family transcriptional regulator {ECO:0000313|EMBL:EIM66453.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2875_5
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1878..3161)
DNA (1284bp) protein (428aa)
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI00036EDF09 rbh
Uncharacterized protein {ECO:0000313|EMBL:EXL01276.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2875_6
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3565..4755)
DNA (1191bp) protein (397aa)
Phage integrase family protein n=1 Tax=Micavibrio aeruginosavorus (strain ARL-13) RepID=G2KSU6_MICAA
phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:AEP10091.1}; TaxID=856793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus (strain ARL-13).;"
SCNpilot_expt_1000_bf_scaffold_2875_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4970..5248)
DNA (279bp) protein (93aa)
integration host factor subunit beta n=1 Tax=Sphingomonas elodea RepID=UPI0002631ADF
Integration host factor subunit beta {ECO:0000313|EMBL:AJP70989.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
histone family protein DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_2875_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5423..7135)
DNA (1713bp) protein (571aa)
30S ribosomal protein S1 n=1 Tax=Sphingomonas elodea RepID=UPI0002631E5C rbh
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111, ECO:0000313|EMBL:AJP70990.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
SCNpilot_expt_1000_bf_scaffold_2875_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..7715
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP73476.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_2875_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7726..8364)
DNA (639bp) protein (213aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238, ECO:0000313|EMBL:AJP70991.1}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cmk; cytidylate kinase (EC:2.7.4.14)
cytidylate kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000300D117 rbh
SCNpilot_expt_1000_bf_scaffold_2875_11
Mesorhizobium sp. UASWS1009, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8426..9028)
DNA (603bp) protein (201aa)
putative S33 family peptidase; K01259 proline iminopeptidase [EC:3.4.11.5]
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002D6791B
Contig28, whole genome shotgun sequence {ECO:0000313|EMBL:KIU58167.1}; Flags: Fragment;; TaxID=1566387 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. UASWS1009.;"
Displaying 11 items

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