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SCNpilot_expt_1000_bf_scaffold_8738

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8738_1
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..204)
DNA (204bp) protein (68aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC0B4
Uncharacterized protein {ECO:0000313|EMBL:EQB02154.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
two component LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8738_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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513..1184
DNA (672bp) protein (224aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI000263088B rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:AJP71799.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8738_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1573..1962
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EBB8E6
Uncharacterized protein {ECO:0000313|EMBL:AJP71798.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8738_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1959..3233
DNA (1275bp) protein (425aa)
secretion protein HylD n=1 Tax=Sphingomonas elodea RepID=UPI000263088D rbh
Secretion protein HylD {ECO:0000313|EMBL:AJP71797.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative efflux pump periplasmic linker protein
SCNpilot_expt_1000_bf_scaffold_8738_5
unknown

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comp(3285..3383)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8738_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4085..5320
DNA (1236bp) protein (412aa)
transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002630590
RND transporter {ECO:0000313|EMBL:AJP71796.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
SCNpilot_expt_1000_bf_scaffold_8738_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5317..6411
DNA (1095bp) protein (365aa)
transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036F2ECB
RND transporter {ECO:0000313|EMBL:AJP71796.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative multidrug efflux pump
SCNpilot_expt_1000_bf_scaffold_8738_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6550..7821
DNA (1272bp) protein (424aa)
transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003802C9C rbh
Transporter {ECO:0000313|EMBL:AJP71795.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative efflux pump outer membrane protein
SCNpilot_expt_1000_bf_scaffold_8738_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7953..8339
DNA (387bp) protein (129aa)
osmotically inducible protein C n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037A1B74
Putative redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:KEZ17322.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
OsmC family protein; K07397 putative redox protein
SCNpilot_expt_1000_bf_scaffold_8738_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8397..9122
DNA (726bp) protein (242aa)
transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FC1651 rbh
Transcriptional regulator {ECO:0000313|EMBL:AJP70616.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_1000_bf_scaffold_8738_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9119..9526
DNA (408bp) protein (136aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP70617.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
integral membrane sensor signal transduction histidine kinase n=1 Tax=Sphingomonas elodea RepID=UPI000263085B
Displaying 11 items

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