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SCNpilot_expt_1000_bf_scaffold_1265

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1265_1
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..276
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288BE09
Uncharacterized protein {ECO:0000313|EMBL:KFG90658.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
SCNpilot_expt_1000_bf_scaffold_1265_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1005..1325
DNA (321bp) protein (107aa)
Integral membrane protein TerC family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QK92_BREDI
Integral membrane protein TerC family protein {ECO:0000313|EMBL:EKY28002.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
integral membrane protein TerC
SCNpilot_expt_1000_bf_scaffold_1265_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1335..1955
DNA (621bp) protein (207aa)
rnd; ribonuclease D (EC:3.1.26.3); K03684 ribonuclease D [EC:3.1.13.5]
3''''-5'''' exonuclease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000306B441 rbh
3'-5' exonuclease {ECO:0000313|EMBL:AJP70829.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1265_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1956..2600
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000370FA47 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP70828.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1265_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2603..3217
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000371ED45
OstA family protein {ECO:0000313|EMBL:AJP70827.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
OstA family protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_expt_1000_bf_scaffold_1265_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3328..4119
DNA (792bp) protein (264aa)
ABC transporter; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030C2CD3 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJP70826.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1265_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4079..5686
DNA (1608bp) protein (536aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6) rbh
RNA polymerase sigma54 factor n=1 Tax=Sphingomonas elodea RepID=UPI0002630FAC rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1265_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5683..6522
DNA (840bp) protein (280aa)
endonuclease n=1 Tax=Sphingomonas elodea RepID=UPI0002630FAB rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL98774.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
metal-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_1265_9
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6559..6945
DNA (387bp) protein (129aa)
UPI0003CFC8DE related cluster n=1 Tax=unknown RepID=UPI0003CFC8DE
Uncharacterized protein {ECO:0000313|EMBL:ESZ88581.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
SCNpilot_expt_1000_bf_scaffold_1265_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7113..8117)
DNA (1005bp) protein (335aa)
RNA procession exonuclease-like protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FA7 rbh
Beta-lactamase {ECO:0000313|EMBL:AJP70825.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative exonuclease rbh
SCNpilot_expt_1000_bf_scaffold_1265_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8196..8861
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADZ3_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40720.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
SCNpilot_expt_1000_bf_scaffold_1265_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8873..11284
DNA (2412bp) protein (804aa)
helicase n=1 Tax=Sphingomonas elodea RepID=UPI00026321B7 rbh
Helicase {ECO:0000313|EMBL:AJP74188.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
DEAD/DEAH box helicase rbh
SCNpilot_expt_1000_bf_scaffold_1265_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11400..12428
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026321B6 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP70824.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1265_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12489..13922
DNA (1434bp) protein (478aa)
D-mannonate oxidoreductase (EC:1.1.1.57); K00040 fructuronate reductase [EC:1.1.1.57] rbh
mannitol dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D4A27E rbh
Mannitol dehydrogenase {ECO:0000313|EMBL:AJP70823.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1265_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13919..15040)
DNA (1122bp) protein (374aa)
tRNA synthetase class II n=1 Tax=Sphingomonas elodea RepID=UPI000263041D rbh
tRNA synthetase class II {ECO:0000313|EMBL:AJP70822.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tRNA synthetase
SCNpilot_expt_1000_bf_scaffold_1265_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15100..16677)
DNA (1578bp) protein (526aa)
3-phosphoglycerate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EF95E5 rbh
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AJP70820.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
D-3-phosphoglycerate dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_1265_17
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16779..17939)
DNA (1161bp) protein (387aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
serC; phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52] rbh
phosphoserine aminotransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000319EF83 rbh
SCNpilot_expt_1000_bf_scaffold_1265_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18098..18358
DNA (261bp) protein (87aa)
extensin-like protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630A58
Extensin {ECO:0000313|EMBL:AJP70817.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1265_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18355..18768
DNA (414bp) protein (138aa)
extensin family protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EED7F4
Extensin {ECO:0000313|EMBL:AJP70817.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
extensin-like protein
SCNpilot_expt_1000_bf_scaffold_1265_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18805..19713
DNA (909bp) protein (303aa)
lysine decarboxylase n=1 Tax=Sphingomonas elodea RepID=UPI0002630A57 rbh
Lysine decarboxylase {ECO:0000313|EMBL:AJP70816.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1265_21
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19727..20218)
DNA (492bp) protein (164aa)
UPI0003D5A1AE related cluster n=1 Tax=unknown RepID=UPI0003D5A1AE
Cell envelope biogenesis protein OmpA {ECO:0000313|EMBL:ETI65424.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
outer membrane lipoprotein
SCNpilot_expt_1000_bf_scaffold_1265_22
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20215..21444)
DNA (1230bp) protein (410aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WJT5_9SPHN
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJK83123.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_1265_23
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21444..21971)
DNA (528bp) protein (176aa)
UPI0003D59822 related cluster n=1 Tax=unknown RepID=UPI0003D59822
Uncharacterized protein {ECO:0000313|EMBL:ETI65426.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1265_24
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22131..22640)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026321D8
Uncharacterized protein {ECO:0000313|EMBL:KFD28524.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1265_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22661..23323)
DNA (663bp) protein (221aa)
cytochrome C n=1 Tax=Sphingomonas elodea RepID=UPI0002630A4D rbh
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26200.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cytochrome c; K08738 cytochrome c
SCNpilot_expt_1000_bf_scaffold_1265_26
unknown

Not on your lists

comp(23512..23718)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1265_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23874..24305
DNA (432bp) protein (144aa)
prephenate dehydratase (EC:4.2.1.51)
prephenate dehydratase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B46024
Prephenate dehydratase {ECO:0000313|EMBL:AJP73266.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1265_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24388..24666
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036DBCA3
Sphingomonas taxi strain 30a NODE_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26927.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1265_29
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24681..25187
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000381D3DC
Uncharacterized protein {ECO:0000313|EMBL:EZP53712.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_1000_bf_scaffold_1265_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25196..26071)
DNA (876bp) protein (292aa)
NUDIX hydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D9EAD2 rbh
NUDIX hydrolase {ECO:0000313|EMBL:AJP73267.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
NUDIX hydrolase rbh
Displaying items 1-30 of 36 in total

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