ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1356

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1356_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..385)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000289E4F7
DNA, contig: SP659 {ECO:0000313|EMBL:GAN15524.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
alpha/beta hydrolase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1356_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1132..2001
DNA (870bp) protein (290aa)
phhA; phenylalanine 4-monooxygenase; K00500 phenylalanine-4-hydroxylase [EC:1.14.16.1] rbh
phenylalanine-4-hydroxylase n=1 Tax=Sphingomonas elodea RepID=UPI00026304FB rbh
Phenylalanine 4-monooxygenase {ECO:0000313|EMBL:GAL99961.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_1000_bf_scaffold_1356_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2120..3094)
DNA (975bp) protein (325aa)
ribosomal L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
Ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J4V3_9SPHN
Ribonucleotide-diphosphate reductase subunit beta {ECO:0000313|EMBL:AJP73827.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1356_4
unknown

Not on your lists

comp(3094..3801)
DNA (708bp) protein (236aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1356_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3791..4273)
DNA (483bp) protein (161aa)
3-oxoacyl-ACP reductase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F76525
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:AIT06818.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1356_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4567..4860)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DB1FEA
Chemotaxis protein {ECO:0000313|EMBL:AJP73825.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
methyl-accepting chemotaxis sensory transducer
SCNpilot_expt_1000_bf_scaffold_1356_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5940..6233)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036457E8
Chemotaxis protein {ECO:0000313|EMBL:AJP73824.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pilJ; twitching motility protein PilJ
SCNpilot_expt_1000_bf_scaffold_1356_8
unknown

Not on your lists

6696..7409
DNA (714bp) protein (238aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1356_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7493..7918
DNA (426bp) protein (142aa)
succinate dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002632213
Succinate dehydrogenase {ECO:0000313|EMBL:AJP73823.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
succinate dehydrogenase cytochrome b556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_expt_1000_bf_scaffold_1356_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7911..8300
DNA (390bp) protein (130aa)
succinate dehydrogenase subunit D (EC:1.3.5.1); K00242 succinate dehydrogenase membrane anchor subunit
succinate dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA1B6
Succinate dehydrogenase {ECO:0000313|EMBL:AJP73822.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1356_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8300..10096
DNA (1797bp) protein (599aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B70820 rbh
Fumarate reductase {ECO:0000313|EMBL:AJP73821.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1356_12
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10166..10378)
DNA (213bp) protein (71aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EGS5_9SPHN
Plasmid maintenance system antidote protein, XRE family {ECO:0000313|EMBL:EHJ59518.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
putative plasmid maintenance system antidote protein
SCNpilot_expt_1000_bf_scaffold_1356_13
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10478..11026
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVT8_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_1356_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11140..12114
DNA (975bp) protein (325aa)
peptidase C13, legumain asparaginyl peptidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003644D9D rbh
Peptidase C13 {ECO:0000313|EMBL:AJP73818.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1356_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12116..12979
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000367485E
Uncharacterized protein {ECO:0000313|EMBL:EZP48867.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1356_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13039..13824
DNA (786bp) protein (262aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
succinate dehydrogenase iron-sulfur protein (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
succinate dehydrogenase iron-sulfur subunit n=1 Tax=Sphingomonas elodea RepID=UPI00026302D8 rbh
SCNpilot_expt_1000_bf_scaffold_1356_17
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13892..14083)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XT04_PSEMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP84470.1}; Flags: Precursor;; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
SCNpilot_expt_1000_bf_scaffold_1356_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14214..14672
DNA (459bp) protein (153aa)
phenylacetic acid degradation protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002892D6A
Sphingomonas taxi strain 30a NODE_40, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30383.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
phenylacetic acid degradation-like protein
SCNpilot_expt_1000_bf_scaffold_1356_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14776..15243
DNA (468bp) protein (156aa)
AFG1 family ATPase n=1 Tax=Sphingomonas elodea RepID=UPI00026302DC
ATPase {ECO:0000313|EMBL:AJP73816.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
AFG1 family ATPase; K06916
SCNpilot_expt_1000_bf_scaffold_1356_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15191..15850
DNA (660bp) protein (220aa)
AFG1 family ATPase n=1 Tax=Sphingomonas elodea RepID=UPI00026302DC
ATPase {ECO:0000313|EMBL:AJP73816.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative ATPase; K06916
SCNpilot_expt_1000_bf_scaffold_1356_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15881..16657
DNA (777bp) protein (259aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IU90_9SPHN rbh
hypothetical protein rbh
Hypothetical membrane protein {ECO:0000313|EMBL:BAK68615.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1356_22
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16659..18560
DNA (1902bp) protein (634aa)
beta-glucuronidase (EC:3.2.1.31); K01195 beta-glucuronidase [EC:3.2.1.31]
beta-glucuronidase n=1 Tax=Sphingomonas elodea RepID=UPI00026302DD rbh
Putative glycosidase {ECO:0000313|EMBL:GAM01415.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_1000_bf_scaffold_1356_23
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18517..19026)
DNA (510bp) protein (170aa)
Transcriptional regulator, HxlR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQN3_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:AHE54990.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
HxlR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1356_24
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19088..19495
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IZB8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE54989.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_1356_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19500..20642)
DNA (1143bp) protein (381aa)
glutathionylspermidine synthase; K01917 glutathionylspermidine synthase [EC:6.3.1.8] rbh
glutathionylspermidine synthase n=1 Tax=Sphingomonas melonis RepID=UPI00037D0E48 rbh
Sphingomonas taxi strain 30a NODE_64, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26771.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_1000_bf_scaffold_1356_26
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20642..21004)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDBBB
Uncharacterized protein {ECO:0000313|EMBL:KEZ21127.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_1000_bf_scaffold_1356_27
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21105..21434
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD530
hypothetical protein
UPF0145 protein S58_07570 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_1356_28
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21440..21730
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3B5B3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO39730.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_1000_bf_scaffold_1356_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21891..22853
DNA (963bp) protein (321aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
mdh; malate dehydrogenase (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] rbh
malate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B44570 rbh
SCNpilot_expt_1000_bf_scaffold_1356_30
unknown

Not on your lists

23305..23523
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031333F5
Displaying items 1-30 of 83 in total

View Taxonomy