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SCNpilot_expt_1000_bf_scaffold_1488

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1488_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..315
DNA (315bp) protein (105aa)
Putative ABC transporter permease protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKB3_9SPHN
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative ABC transporter permease; K09686 antibiotic transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1488_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

321..1724
DNA (1404bp) protein (468aa)
RND transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489C8E rbh
RND transporter {ECO:0000313|EMBL:AJP71747.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative outer membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_1488_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1750..3342)
DNA (1593bp) protein (531aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
Signal transduction histidine kinase n=1 Tax=Caulobacter sp. AP07 RepID=J3A4X1_9CAUL rbh
integral membrane sensor signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_1488_4
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3327..4043)
DNA (717bp) protein (239aa)
Two-component system response regulator n=2 Tax=Sphingobium RepID=D4Z7L8_SPHJU rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:EQB02623.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
two-component system response regulator; K02483 two-component system, OmpR family, response regulator rbh
SCNpilot_expt_1000_bf_scaffold_1488_5
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4040..5647)
DNA (1608bp) protein (536aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B48A46 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL26067.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
cydD; ABC transporter ATP-binding protein CydD rbh
SCNpilot_expt_1000_bf_scaffold_1488_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5760..7049
DNA (1290bp) protein (430aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X2X1_9SPHN rbh
Molecular chaperone Hsp70 {ECO:0000313|EMBL:AIT07788.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
molecular chaperone-like protein; K04046 hypothetical chaperone protein rbh
SCNpilot_expt_1000_bf_scaffold_1488_7
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(7061..8122)
DNA (1062bp) protein (354aa)
copper resistance protein CopD n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDAF6
Copper resistance protein CopD {ECO:0000313|EMBL:KIJ72440.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
copper resistance protein CopD
SCNpilot_expt_1000_bf_scaffold_1488_8
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8125..8493)
DNA (369bp) protein (123aa)
copper resistance protein C n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDAF7
Copper resistance protein C {ECO:0000313|EMBL:ETI65489.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
copper resistance protein CopC; K07156
SCNpilot_expt_1000_bf_scaffold_1488_9
unknown

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8690..8956
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1488_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8953..9393
DNA (441bp) protein (147aa)
heavy metal resistance protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000364822B
Heavy metal resistance protein {ECO:0000313|EMBL:KEZ15189.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
heavy metal resistance protein
SCNpilot_expt_1000_bf_scaffold_1488_11
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9390..9956
DNA (567bp) protein (189aa)
FecI sigma-24 factor n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287CF22
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_1488_12
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10033..11937
DNA (1905bp) protein (635aa)
UPI0003D5A74C related cluster n=1 Tax=unknown RepID=UPI0003D5A74C
Copper-binding protein {ECO:0000313|EMBL:ETI65494.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
copper resistance protein CopA
SCNpilot_expt_1000_bf_scaffold_1488_13
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11934..12920
DNA (987bp) protein (329aa)
copper resistance protein CopB n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B57DD0
Copper resistance protein CopB {ECO:0000313|EMBL:KFL46262.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
copper resistance protein CopB; K07233 copper resistance protein B
SCNpilot_expt_1000_bf_scaffold_1488_14
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12963..14192)
DNA (1230bp) protein (410aa)
Fosmidomycin resistance protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IDF6_9SPHN rbh
Fosmidomycin resistance protein {ECO:0000313|EMBL:EQB07664.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein
SCNpilot_expt_1000_bf_scaffold_1488_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14264..15043
DNA (780bp) protein (260aa)
AraC family transcriptional regulator n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C004 rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:KEZ18698.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
AraC family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1488_16
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15135..16229
DNA (1095bp) protein (365aa)
peptidase M19; K01273 membrane dipeptidase [EC:3.4.13.19] rbh
peptidase M19 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B43FAD rbh
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_1000_bf_scaffold_1488_17
unknown

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16319..16582
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1488_18
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16699..17478)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037C5B27 rbh
methyltransferase
Methyltransferase {ECO:0000313|EMBL:ADG10138.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_1488_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17607..18791
DNA (1185bp) protein (395aa)
histidine kinase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6F037 rbh
Histidine kinase {ECO:0000313|EMBL:EQA96993.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
yesM; two-component system sensor histidine kinase YesM rbh
SCNpilot_expt_1000_bf_scaffold_1488_20
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18781..19521
DNA (741bp) protein (247aa)
LytTR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488531 rbh
LytTR family two component transcriptional regulator rbh
LytTR family two component transcriptional regulator {ECO:0000313|EMBL:AGH49975.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_1488_21
unknown

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comp(19574..19924)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1488_22
unknown

Not on your lists

19993..20178
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1488_23
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20210..22096
DNA (1887bp) protein (629aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000349C793 rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO91664.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
putative lipoprotein rbh
SCNpilot_expt_1000_bf_scaffold_1488_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22500..23045
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031805B1
Peptidylprolyl isomerase {ECO:0000313|EMBL:AJP73672.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1488_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23042..23374
DNA (333bp) protein (111aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase [EC:5.2.1.8]
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWP3_9SPHN
Peptidylprolyl isomerase {ECO:0000313|EMBL:AJP73672.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1488_26
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23423..24022)
DNA (600bp) protein (200aa)
ABC transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EE0529
Uncharacterized protein {ECO:0000313|EMBL:GAO38155.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
ABC transporter auxiliary component-like protein
SCNpilot_expt_1000_bf_scaffold_1488_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24031..24996)
DNA (966bp) protein (322aa)
mammalian cell entry protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FEE109 rbh
Mammalian cell entry protein {ECO:0000313|EMBL:AJP73331.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
mammalian cell entry domain-containing protein; K02067 putative ABC transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1488_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24996..25817)
DNA (822bp) protein (274aa)
iron ABC transporter ATP-binding protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FFB rbh
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJP73330.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1488_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25814..26890)
DNA (1077bp) protein (359aa)
ABC transporter permease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000315D86D rbh
ABC transporter permease {ECO:0000313|EMBL:AJP73329.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1488_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26952..27623
DNA (672bp) protein (224aa)
haloacid dehalogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002630FF9 rbh
Haloacid dehalogenase {ECO:0000313|EMBL:AJP74631.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
HAD-superfamily hydrolase
Displaying items 1-30 of 37 in total

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