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SCNpilot_expt_1000_bf_scaffold_1803

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1803_1
unknown

Not on your lists

comp(2..94)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1803_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61..1857)
DNA (1797bp) protein (599aa)
X-Pro aminopeptidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D40D83 rbh
X-Pro aminopeptidase {ECO:0000313|EMBL:AJP74739.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M24
SCNpilot_expt_1000_bf_scaffold_1803_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1941..3005
DNA (1065bp) protein (355aa)
Threonine aldolase family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQD2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP73986.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
threonine aldolase family protein rbh
SCNpilot_expt_1000_bf_scaffold_1803_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3009..3326)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630404
Uncharacterized protein {ECO:0000313|EMBL:AIT07215.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_1000_bf_scaffold_1803_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3451..4203
DNA (753bp) protein (251aa)
TonB-like protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630405
DNA, contig: SP624 {ECO:0000313|EMBL:GAN13732.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TonB-like protein
SCNpilot_expt_1000_bf_scaffold_1803_6
unknown

Not on your lists

comp(4700..4891)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1803_7
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4933..5475)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDD28
Putative lipoprotein {ECO:0000313|EMBL:EZP55557.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1803_8
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5564..6970)
DNA (1407bp) protein (469aa)
pentapeptide repeat-containing protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E99E rbh
Uncharacterized protein {ECO:0000313|EMBL:KGB58574.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
pentapeptide repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_1803_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7142..9334)
DNA (2193bp) protein (731aa)
excinuclease ABC subunit B n=1 Tax=Sphingomonas elodea RepID=UPI00026316C2 rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
UvrABC system protein B; K03702 excinuclease ABC subunit B
SCNpilot_expt_1000_bf_scaffold_1803_10
unknown

Not on your lists

9388..9957
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037F2FA0
SCNpilot_expt_1000_bf_scaffold_1803_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10005..10463)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC4F0
Uncharacterized protein {ECO:0000313|EMBL:AJP74095.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1803_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10556..11713)
DNA (1158bp) protein (386aa)
Zn-dependent hydrolase n=1 Tax=Sphingomonas elodea RepID=UPI00026316C0 rbh
Zn-dependent hydrolase {ECO:0000313|EMBL:AJP74770.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_1803_13
unknown

Not on your lists

comp(11720..12631)
DNA (912bp) protein (304aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1803_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12729..13895
DNA (1167bp) protein (389aa)
ligA; NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
NAD-dependent DNA ligase LigA n=1 Tax=Sphingomonas elodea RepID=UPI00026316BF
SCNpilot_expt_1000_bf_scaffold_1803_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14065..16857
DNA (2793bp) protein (931aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0A5 rbh
TonB-dependent receptor {ECO:0000313|EMBL:AJP74093.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_1000_bf_scaffold_1803_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17775..18812
DNA (1038bp) protein (346aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP74769.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
histidine kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F385A0 rbh
signal transduction histidine kinase LytS
SCNpilot_expt_1000_bf_scaffold_1803_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18809..19615
DNA (807bp) protein (269aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D43B05 rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:AJP74092.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator rbh
SCNpilot_expt_1000_bf_scaffold_1803_18
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20053..20820
DNA (768bp) protein (256aa)
PEP phosphonomutase n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NN70_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:GAO39732.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1803_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21050..21322)
DNA (273bp) protein (91aa)
glutathione peroxidase n=1 Tax=Sphingomonas elodea RepID=UPI00026306CE
Glutathione peroxidase {ECO:0000313|EMBL:AJP73959.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1803_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21339..23099)
DNA (1761bp) protein (587aa)
hypothetical protein; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
divalent ion tolerance protein CutA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031477DF rbh
Cation tolerance protein CutA {ECO:0000313|EMBL:AJP73960.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1803_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23051..23422)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D5379E
Uncharacterized protein {ECO:0000313|EMBL:AJP73961.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1803_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23566..23979
DNA (414bp) protein (138aa)
ubiquinol-cytochrome C reductase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037C5692
Ubiquinol-cytochrome C reductase {ECO:0000313|EMBL:AJP73962.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1803_23
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23982..24839)
DNA (858bp) protein (286aa)
lysophospholipase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00030E71C6 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADL02255.1}; Flags: Precursor;; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_expt_1000_bf_scaffold_1803_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24897..25460)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287B76B
DNA, contig: SP617 {ECO:0000313|EMBL:GAN13323.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_1000_bf_scaffold_1803_25
Dokdonia donghaensis, Dokdonia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25540..25962)
DNA (423bp) protein (141aa)
Uncharacterized protein n=9 Tax=Xanthomonas RepID=Q8PN10_XANAC
Membrane protein {ECO:0000313|EMBL:KGO06554.1}; TaxID=1300343 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Dokdonia.;" source="Dokdonia donghaensis DSW-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1803_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26074..26784)
DNA (711bp) protein (237aa)
GTP-binding protein TypA n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6DEE3
GTP-binding protein TypA {ECO:0000313|EMBL:AJP73964.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
GTP-binding protein TypA; K06207 GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_1803_27
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

26907..27374
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Wolbachia endosymbiont of Drosophila simulans RepID=Q4E8C7_9RICK
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
SCNpilot_expt_1000_bf_scaffold_1803_28
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28208..28783
DNA (576bp) protein (192aa)
NADPH-dependent FMN reductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GG0_MESSB id=5103538 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative reductase {ECO:0000313|EMBL:KEA64679.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
NADPH-dependent FMN reductase
SCNpilot_expt_1000_bf_scaffold_1803_29
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(28758..29531)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000366BA25
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABJ85156.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_1803_30
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

29588..29974
DNA (387bp) protein (129aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YW0_SOLUE
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABJ85155.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Displaying items 1-30 of 41 in total

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