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SCNpilot_expt_1000_bf_scaffold_1902

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1902_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..371
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002632177
Uncharacterized protein {ECO:0000313|EMBL:AJP73012.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1902_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1530..2084
DNA (555bp) protein (185aa)
molecular chaperone GrpE n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E4781A
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
grpE; molecular chaperone GrpE; K03687 molecular chaperone GrpE
SCNpilot_expt_1000_bf_scaffold_1902_3
unknown

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2163..2381
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1902_4
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2328..2912)
DNA (585bp) protein (195aa)
DNA repair protein RadC n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B45F2E
DNA repair protein RadC; K03630 DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:ABQ70814.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1902_5
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2852..3340)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IYZ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB14879.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1902_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3382..3738)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DBT1_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:AJP73397.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1902_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3804..4319)
DNA (516bp) protein (172aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0H4B3_9SPHN
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:EZP70301.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1902_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4755..5189
DNA (435bp) protein (145aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EE221D
Putative membrane protein {ECO:0000313|EMBL:KEZ19927.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1902_9
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5273..5671
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488FA4
Uncharacterized protein {ECO:0000313|EMBL:EJL20767.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1902_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5703..6512
DNA (810bp) protein (270aa)
oxidoreductase FAD/NAD(P)-binding protein; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
ferredoxin--NADP reductase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D31743 rbh
Ferredoxin-NADP reductase {ECO:0000313|EMBL:AJP71086.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1902_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6557..9346
DNA (2790bp) protein (930aa)
PII uridylyl-transferase (EC:2.7.7.59) rbh
PII uridylyl-transferase n=1 Tax=Sphingomonas elodea RepID=UPI0002632180 rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_1902_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9363..9746
DNA (384bp) protein (128aa)
glyoxalase n=1 Tax=Sphingomonas elodea RepID=UPI000263217F
Glyoxalase {ECO:0000313|EMBL:AJP73006.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1902_13

Not on your lists

comp(9903..10763)
DNA (861bp) protein (287aa)
GH16 family protein {ECO:0000313|EMBL:AJF39933.1}; EC=3.2.1.39 {ECO:0000313|EMBL:AJF39933.1};; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Licheninase (EC:3.2.1.73)
glycoside hydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003772EFB rbh
SCNpilot_expt_1000_bf_scaffold_1902_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10763..11266)
DNA (504bp) protein (168aa)
translation initiation factor IF-3 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000319FF8F rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000313|EMBL:AJP73009.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
SCNpilot_expt_1000_bf_scaffold_1902_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11523..13022
DNA (1500bp) protein (500aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A372 rbh
Uncharacterized protein {ECO:0000313|EMBL:KEZ19640.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
gtuS-2; Glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_1902_16
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12988..13437)
DNA (450bp) protein (150aa)
N-acetyltransferase GCN5; K03827 putative acetyltransferase [EC:2.3.1.-]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IEQ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB08149.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_1000_bf_scaffold_1902_17
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13437..13655)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000378C58E
UPF0060 membrane protein PK98_10520 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein; K09771 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1902_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13711..14814)
DNA (1104bp) protein (368aa)
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
threonyl-tRNA synthetase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A371
Displaying 18 items

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