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SCNpilot_expt_1000_bf_scaffold_11199

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11199_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(84..932)
DNA (849bp) protein (283aa)
Response regulator receiver protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y269_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AJP70773.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LytTR family two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_11199_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1066..1680
DNA (615bp) protein (205aa)
TonB-dependent receptor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R7X1_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:AJP70772.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_11199_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2322..2951
DNA (630bp) protein (210aa)
UPI0003CFFF22 related cluster n=1 Tax=unknown RepID=UPI0003CFFF22
Uncharacterized protein {ECO:0000313|EMBL:AJP70772.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_11199_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2955..4043)
DNA (1089bp) protein (363aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB156 rbh
SCNpilot_expt_1000_bf_scaffold_11199_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4040..5062)
DNA (1023bp) protein (341aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:AJP72471.1}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
shikimate kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002632141
SCNpilot_expt_1000_bf_scaffold_11199_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6293..6517
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI000263213F
Uncharacterized protein {ECO:0000313|EMBL:AJP74489.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11199_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6838..7272
DNA (435bp) protein (145aa)
tyrosine recombinase XerD n=1 Tax=Sphingomonas elodea RepID=UPI000263213E
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
xerD; tyrosine recombinase XerD; K04763 integrase/recombinase XerD
Displaying 7 items

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