ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3339

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3339_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..698)
DNA (696bp) protein (232aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria;
gcvPA; glycine dehydrogenase subunit 1 (EC:1.4.4.2); K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2]
glycine dehydrogenase subunit 1 n=1 Tax=Sphingomonas elodea RepID=UPI0002630F9C
SCNpilot_expt_1000_bf_scaffold_3339_2
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(823..1194)
DNA (372bp) protein (124aa)
glycine cleavage system protein H n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DDF1A5
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
glycine cleavage system protein H; K02437 glycine cleavage system H protein
SCNpilot_expt_1000_bf_scaffold_3339_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1194..2357)
DNA (1164bp) protein (388aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10) rbh
aminomethyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031AD0D4 rbh
SCNpilot_expt_1000_bf_scaffold_3339_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2644..2976)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M5A129_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AHX15567.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3339_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2973..3467)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D42F65
Uncharacterized protein {ECO:0000313|EMBL:AJP74207.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3339_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3710..4663
DNA (954bp) protein (318aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] rbh
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D67E6D rbh
SCNpilot_expt_1000_bf_scaffold_3339_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4712..5719
DNA (1008bp) protein (336aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
thrB; homoserine kinase type II; K02204 homoserine kinase type II [EC:2.7.1.39] rbh
homoserine kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002630762 rbh
SCNpilot_expt_1000_bf_scaffold_3339_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5719..6156
DNA (438bp) protein (146aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rnhA; ribonuclease H (EC:3.1.26.4)
RNaseH ribonuclease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031BA1A6
SCNpilot_expt_1000_bf_scaffold_3339_9
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6183..6392)
DNA (210bp) protein (70aa)
Beta-lactamase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T914_CAUSK
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ABZ74401.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_3339_10
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6673..6888)
DNA (216bp) protein (72aa)
Beta-lactamase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T914_CAUSK
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ABZ74401.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_3339_11
unknown

Not on your lists

7002..7475
DNA (474bp) protein (158aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3339_12
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7364..9817)
DNA (2454bp) protein (818aa)
glycoside hydrolase family protein; K01192 beta-mannosidase [EC:3.2.1.25] rbh
Glycoside hydrolase family 2 sugar binding protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PCB3_9BURK rbh
Glycoside hydrolase family 2 sugar binding protein {ECO:0000313|EMBL:ELX09252.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
SCNpilot_expt_1000_bf_scaffold_3339_13
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9958..10656)
DNA (699bp) protein (233aa)
Bacterial regulatory protein, tetR family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QIS9_9CAUL
Bacterial regulatory protein, tetR family protein {ECO:0000313|EMBL:EGF91838.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
transcriptional regulator, TetR family
SCNpilot_expt_1000_bf_scaffold_3339_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10800..13010)
DNA (2211bp) protein (737aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEA0
Uncharacterized protein {ECO:0000313|EMBL:AIT05305.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_3339_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13116..14756)
DNA (1641bp) protein (547aa)
AMP-dependent synthetase and ligase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0P5_9PROT rbh
AMP-dependent synthetase {ECO:0000313|EMBL:AIT05306.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
AMP-dependent synthetase and ligase rbh
SCNpilot_expt_1000_bf_scaffold_3339_16
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15296..16387
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI00035C486A
Poly(3-hydroxybutyrate) depolymerase {ECO:0000313|EMBL:KJV08841.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein; K03932 polyhydroxybutyrate depolymerase
SCNpilot_expt_1000_bf_scaffold_3339_17
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16414..17643
DNA (1230bp) protein (410aa)
Major facilitator superfamily MFS_1 n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QMZ1_BRESC rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADL02147.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_expt_1000_bf_scaffold_3339_18
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17727..18680)
DNA (954bp) protein (318aa)
esterase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCA71 rbh
Alpha/beta hydrolase fold family protein {ECO:0000313|EMBL:KGB92234.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
putative hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_3339_19
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18694..18918)
DNA (225bp) protein (75aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T6G0_CAUSK
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABZ69577.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
Displaying 19 items

View Taxonomy