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SCNpilot_expt_1000_bf_scaffold_3354

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3354_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..509
DNA (507bp) protein (169aa)
Fur family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FA20DC
Fur family transcriptional regulator {ECO:0000313|EMBL:AJP74112.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
fur; ferric uptake regulator Fur; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_expt_1000_bf_scaffold_3354_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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511..1392
DNA (882bp) protein (294aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EF3A46 rbh
Acyl-phosphate glycerol 3-phosphate acyltransferase {ECO:0000313|EMBL:AJP74111.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
acetyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_3354_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1442..2776
DNA (1335bp) protein (445aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHS
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002631311 rbh
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_expt_1000_bf_scaffold_3354_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3148..4149
DNA (1002bp) protein (334aa)
phosphate starvation protein PhoH n=1 Tax=Sphingomonas elodea RepID=UPI0002631310 rbh
PhoH {ECO:0000313|EMBL:AJP74110.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_expt_1000_bf_scaffold_3354_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4187..4696
DNA (510bp) protein (170aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rRNA maturation factor n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030A1172
metalloprotease ybeY; K07042 probable rRNA maturation factor
SCNpilot_expt_1000_bf_scaffold_3354_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4706..5614
DNA (909bp) protein (303aa)
magnesium and cobalt transporter n=1 Tax=Sphingomonas elodea RepID=UPI000263130C rbh
Cobalt transporter {ECO:0000313|EMBL:AJP74106.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3354_7
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5867..8074
DNA (2208bp) protein (736aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
katG; catalase/peroxidase; K03782 catalase-peroxidase [EC:1.11.1.21]
Catalase-peroxidase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHW7_9SPHN
SCNpilot_expt_1000_bf_scaffold_3354_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8419..9564
DNA (1146bp) protein (382aa)
sorbosone dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E9BC24 rbh
Sorbosone dehydrogenase {ECO:0000313|EMBL:AJP74105.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
L-sorbosone dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3354_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9705..10685)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630544 rbh
Agmatine deiminase {ECO:0000313|EMBL:AJP73856.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
agmatine deiminase rbh
SCNpilot_expt_1000_bf_scaffold_3354_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10705..12324)
DNA (1620bp) protein (540aa)
peptidase M28 n=1 Tax=Sphingomonas elodea RepID=UPI00026303F5 rbh
Peptidase M28 {ECO:0000313|EMBL:AJP73857.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M28 family protein rbh
SCNpilot_expt_1000_bf_scaffold_3354_11
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12521..13510)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KL54_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB34108.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3354_12
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13901..14131)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KBL9_9SPHN
TonB-dependent receptor plug {ECO:0000313|EMBL:AJA09471.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
cyclic nucleotide-binding protein
Displaying 12 items

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