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SCNpilot_expt_1000_bf_scaffold_9246

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9246_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1149
DNA (1149bp) protein (383aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tyrS; tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
tyrosyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003787D95
SCNpilot_expt_1000_bf_scaffold_9246_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1261..1581
DNA (321bp) protein (107aa)
pilus assembly protein PilZ n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB07C
Uncharacterized protein {ECO:0000313|EMBL:KHA64839.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_1000_bf_scaffold_9246_3
unknown

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comp(1619..1807)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9246_4
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1998..3173
DNA (1176bp) protein (392aa)
UPI0003CE2192 related cluster n=1 Tax=unknown RepID=UPI0003CE2192
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_9246_5
unknown

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3227..3373
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9246_6
unknown

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3723..4022
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9246_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4094..6151)
DNA (2058bp) protein (686aa)
DEAD/DEAH box helicase; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] rbh
ATP-dependent DNA helicase RecG n=1 Tax=Sphingomonas elodea RepID=UPI00026306A3 rbh
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:AJP71835.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_9246_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6202..6420)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026306A4
Uncharacterized protein {ECO:0000313|EMBL:AJP71822.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_9246_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6609..6875
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026306A5
Uncharacterized protein {ECO:0000313|EMBL:AJP71836.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9246_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6882..7085
DNA (204bp) protein (68aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
transcription-repair coupling factor n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000314372B
SCNpilot_expt_1000_bf_scaffold_9246_11
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7276..8394)
DNA (1119bp) protein (373aa)
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_9246_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9640..10278
DNA (639bp) protein (213aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
transcription-repair coupling factor n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000314372B
Displaying 12 items

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