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SCNpilot_expt_1000_bf_scaffold_9391

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9391_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1990
DNA (1989bp) protein (663aa)
glutamate dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002630543
Glutamate dehydrogenase {ECO:0000313|EMBL:AJP70753.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
NAD-specific glutamate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_9391_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1953..3077
DNA (1125bp) protein (375aa)
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2]
glutamate dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002630543
Glutamate dehydrogenase {ECO:0000313|EMBL:AJP70753.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_9391_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3074..3616
DNA (543bp) protein (181aa)
NAD-specific glutamate dehydrogenase (EC:1.4.1.2); K15371 glutamate dehydrogenase [EC:1.4.1.2]
glutamate dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002630543
Glutamate dehydrogenase {ECO:0000313|EMBL:AJP70753.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_9391_4
unknown

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comp(3681..3803)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9391_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4154..4810
DNA (657bp) protein (219aa)
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631630 rbh
Membrane protein {ECO:0000313|EMBL:AJP70752.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
PepSY-associated TM helix domain-containing protein; K09939 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_9391_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4823..5350
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DFCA0A
Uncharacterized protein {ECO:0000313|EMBL:AJP70751.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9391_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5370..6233
DNA (864bp) protein (288aa)
nickel transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002ECF3FE rbh
ABC transporter permease {ECO:0000313|EMBL:AJP70750.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9391_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6441..7154
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031F68EC
Thiamine biosynthesis protein ApbE {ECO:0000313|EMBL:AJP70749.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
thiamine biosynthesis lipoprotein; apbe family
SCNpilot_expt_1000_bf_scaffold_9391_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7507..8181)
DNA (675bp) protein (225aa)
PKHD-type hydroxylase TS85_01260 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Fe(II)-dependent oxygenase n=1 Tax=Sphingomonas elodea RepID=UPI00026303FF rbh
Fe(II)-dependent oxygenase superfamily protein rbh
SCNpilot_expt_1000_bf_scaffold_9391_10
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8175..8768)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630400 rbh
Sel1 domain-containing protein
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:ABQ70369.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_9391_11
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8870..9457)
DNA (588bp) protein (196aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas elodea RepID=UPI0002630401
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_9391_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9561..10208)
DNA (648bp) protein (216aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288B909
TonB-dependent receptor {ECO:0000313|EMBL:AIT06476.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
Displaying 12 items

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