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SCNpilot_expt_1000_bf_scaffold_5103

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5103_1
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..399)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000365B67A
Uncharacterized protein {ECO:0000313|EMBL:EQB16786.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
conjugal transfer protein TraB; K12065 conjugal transfer pilus assembly protein TraB
SCNpilot_expt_1000_bf_scaffold_5103_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(396..1190)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HUK2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA07208.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5103_3
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1174..1809)
DNA (636bp) protein (212aa)
sex pilus assembly and synthesis protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003778824 rbh
Conjugal transfer protein {ECO:0000313|EMBL:EXS69370.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
putative sex pilus assembly and synthesis protein; K12067 conjugal transfer pilus assembly protein TraE rbh
SCNpilot_expt_1000_bf_scaffold_5103_4
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1815..2081)
DNA (267bp) protein (89aa)
Membrane protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J4A2_9SPHN
Membrane protein {ECO:0000313|EMBL:EQB16789.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5103_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2190..2507)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003736A9D
Conserved Putative secreted protein {ECO:0000313|EMBL:AJA07211.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5103_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2685..3449)
DNA (765bp) protein (255aa)
putative protein-disulfide isomerase; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1] rbh
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003699378 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53688.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_1000_bf_scaffold_5103_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3433..3732)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036DDF24
Uncharacterized protein {ECO:0000313|EMBL:AHE53689.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_1000_bf_scaffold_5103_8
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4076..4525
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000372F58C
Uncharacterized protein {ECO:0000313|EMBL:AJA07214.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5103_9
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4637..5056
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J4A6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EXS69376.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5103_10
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5056..5670
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037FCC69
Uncharacterized protein {ECO:0000313|EMBL:AJA07216.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5103_11
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5857..5997
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IY44_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16795.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_expt_1000_bf_scaffold_5103_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6751..8496
DNA (1746bp) protein (582aa)
asparagine synthase; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] rbh
Asparagine synthase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IM61_9SPHN rbh
Asparagine synthase {ECO:0000313|EMBL:CCA92513.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_5103_13
unknown

Not on your lists

8525..8674
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 13 items

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