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SCNpilot_expt_1000_bf_scaffold_5353

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5353_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160..1071
DNA (912bp) protein (304aa)
permease n=1 Tax=Sphingomonas elodea RepID=UPI0002630D7C rbh
Permease {ECO:0000313|EMBL:AJP73395.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K07090
SCNpilot_expt_1000_bf_scaffold_5353_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1068..1829
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630D7D rbh
Transmembrane protein {ECO:0000313|EMBL:AJP73394.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5353_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1899..3566
DNA (1668bp) protein (556aa)
ATPase n=1 Tax=Sphingomonas elodea RepID=UPI0002630D7E rbh
ATPase {ECO:0000313|EMBL:AJP73393.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5353_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3591..3797)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B62837
Uncharacterized protein {ECO:0000313|EMBL:AJP74647.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5353_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3794..4558)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD4C0
Uncharacterized protein {ECO:0000313|EMBL:AJP74647.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5353_6
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4558..5946)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003701B0D rbh
Putative bacteriophage N4 adsorption protein B {ECO:0000313|EMBL:GAM01030.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
putative bacteriophage N4 adsorption protein B rbh
SCNpilot_expt_1000_bf_scaffold_5353_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6102..10295
DNA (4194bp) protein (1398aa)
alpha-2-macroglobulin n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD4C9 rbh
Alpha-2-macroglobulin {ECO:0000313|EMBL:AJP73473.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
alpha-2-macroglobulin domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_5353_8
unknown

Not on your lists

comp(10160..11152)
DNA (993bp) protein (331aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5353_9
unknown

Not on your lists

comp(11212..11655)
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5353_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11952..13883
DNA (1932bp) protein (644aa)
penicillin-binding protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD4CA rbh
Penicillin-binding protein {ECO:0000313|EMBL:AJP74659.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
penicillin-binding protein 1C rbh
SCNpilot_expt_1000_bf_scaffold_5353_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14196..14678)
DNA (483bp) protein (161aa)
membrane protein SmpA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DD38FB
Membrane protein SmpA {ECO:0000313|EMBL:AJP74660.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative small protein A
SCNpilot_expt_1000_bf_scaffold_5353_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14814..15323
DNA (510bp) protein (170aa)
ubiquinol-cytochrome C chaperone n=1 Tax=Sphingomonas elodea RepID=UPI0002630D77
Ubiquinol-cytochrome C chaperone {ECO:0000313|EMBL:AJP74661.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5353_13
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15320..15871
DNA (552bp) protein (184aa)
chitinase n=1 Tax=Sphingomonas elodea RepID=UPI0002630D76
Strain SA-120 Contig225, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01555.1}; Flags: Fragment;; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5353_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15874..16383
DNA (510bp) protein (170aa)
Putative ATPase n=1 Tax=Rhizobium sp. CF142 RepID=J2L7Y9_9RHIZ
Putative ATPase {ECO:0000313|EMBL:EJJ29612.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5353_15
unknown

Not on your lists

comp(16388..16867)
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5353_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16912..17565)
DNA (654bp) protein (218aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002630D74 rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:AJP73477.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5353_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17684..18202
DNA (519bp) protein (173aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB20
TonB-dependent receptor {ECO:0000313|EMBL:AJP73478.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor
Displaying 17 items

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