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SCNpilot_expt_1000_bf_scaffold_5434

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5434_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..254)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E46D54
TonB-dependent receptor {ECO:0000313|EMBL:AIT08009.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_1000_bf_scaffold_5434_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(293..889)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000361A7F2
DNA, contig: SP630 {ECO:0000313|EMBL:GAN14074.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
anti-FecI sigma factor FecR
SCNpilot_expt_1000_bf_scaffold_5434_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(862..1155)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000361A7F2
FecR family protein {ECO:0000313|EMBL:EZP57474.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_1000_bf_scaffold_5434_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1145..1579)
DNA (435bp) protein (145aa)
RNA polymerase sigma-70 factor n=1 Tax=Sphingomonas elodea RepID=UPI00026321A1
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AIT05927.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
fecI; RNA polymerase sigma-70 family protein
SCNpilot_expt_1000_bf_scaffold_5434_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1545..2447)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036034A4 rbh
YdjC-like family protein {ECO:0000313|EMBL:EZP57472.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein; K03478 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5434_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2422..3363)
DNA (942bp) protein (314aa)
glycosyl transferase family 2 n=1 Tax=Sphingomonas elodea RepID=UPI00026321A3 rbh
Glycosyl transferase 2 family protein {ECO:0000313|EMBL:EZP57471.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
glycosyl transferase family protein
SCNpilot_expt_1000_bf_scaffold_5434_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3497..4957
DNA (1461bp) protein (487aa)
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI00026321A4 rbh
Membrane protein {ECO:0000313|EMBL:AIT08012.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5434_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5036..5557
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631053
DNA, contig: SP657 {ECO:0000313|EMBL:GAN15409.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5434_9
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

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5559..6848
DNA (1290bp) protein (430aa)
YjgP/YjgQ family permease n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B6964C
Permease YjgP/YjgQ {ECO:0000313|EMBL:EMD82921.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5434_10
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7000..7203
DNA (204bp) protein (68aa)
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
5-dehydro-4-deoxyglucarate dehydratase (EC:4.2.1.41); K01707 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
Probable 5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MT20_9SPHN
Displaying 10 items

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