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SCNpilot_expt_1000_bf_scaffold_5686

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5686_1
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..338
DNA (336bp) protein (112aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
acetyl-CoA synthetase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024885C1
acetyl-coenzyme A synthetase
SCNpilot_expt_1000_bf_scaffold_5686_2
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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335..838
DNA (504bp) protein (168aa)
O-acetyl-ADP-ribose deacetylase n=2 Tax=Geobacter metallireducens RepID=Q39RA2_GEOMG
Appr-1-p processing
O-acetyl-ADP-ribose deacetylase {ECO:0000313|EMBL:ABB33222.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
SCNpilot_expt_1000_bf_scaffold_5686_3

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912..2381
DNA (1470bp) protein (490aa)
endothelin-converting protein 1 (EC:3.4.24.71); K01415 endothelin-converting enzyme [EC:3.4.24.71]
endothelin-converting protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030C3734 rbh
Peptidase family M13 {ECO:0000313|EMBL:AGU10887.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_1000_bf_scaffold_5686_4
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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2378..2908
DNA (531bp) protein (177aa)
endothelin-converting protein 1 (EC:3.4.24.71); K01415 endothelin-converting enzyme [EC:3.4.24.71]
endothelin-converting protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030C3734
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_expt_1000_bf_scaffold_5686_5
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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2928..3719
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TQM1_RICCO rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EEF21843.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_1000_bf_scaffold_5686_6
unknown

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3862..3978
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5686_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4053..5849)
DNA (1797bp) protein (599aa)
amino acid transporter n=1 Tax=Sphingomonas elodea RepID=UPI000263165C rbh
Sphingomonas taxi strain 30a NODE_17, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30014.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
amino acid/peptide transporter rbh
SCNpilot_expt_1000_bf_scaffold_5686_8
unknown

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comp(6003..6314)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5686_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6445..7044
DNA (600bp) protein (200aa)
nitroreductase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DCE1FF rbh
Putative nitroreductase {ECO:0000313|EMBL:GAM01073.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
putative nitroreductase
SCNpilot_expt_1000_bf_scaffold_5686_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7063..7419
DNA (357bp) protein (119aa)
GntR family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FFECE4
GntR family transcriptional regulator {ECO:0000313|EMBL:AJP73838.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5686_11
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8035..8334
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIS4_MESAW
hypothetical protein
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ESY88564.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCNpilot_expt_1000_bf_scaffold_5686_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8331..8552)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B34C8E
DNA, contig: SP659 {ECO:0000313|EMBL:GAN15524.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
Displaying 12 items

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