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SCNpilot_expt_1000_bf_scaffold_5850

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5850_1
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..146)
DNA (144bp) protein (48aa)
MFS transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002630534
Sugar fucose permease family protein {ECO:0000313|EMBL:AJA09427.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
major facilitator transporter; K02429 MFS transporter, FHS family, L-fucose permease
SCNpilot_expt_1000_bf_scaffold_5850_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(172..1179)
DNA (1008bp) protein (336aa)
asparaginase; K01444 N4-(beta-N-acetylglucosaminyl)-L-asparaginase [EC:3.5.1.26]
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003675EDB rbh
Sphingomonas taxi strain 30a NODE_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27353.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_1000_bf_scaffold_5850_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1176..1898)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000371E383
CutC protein {ECO:0000313|EMBL:GAN15094.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
CutC family protein; K06201 copper homeostasis protein
SCNpilot_expt_1000_bf_scaffold_5850_4
Shewanella amazonensis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1898..4219)
DNA (2322bp) protein (774aa)
Putative alpha-1,2-mannosidase n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=A1S298_SHEAM rbh
putative alpha-1,2-mannosidase rbh
Putative alpha-1,2-mannosidase {ECO:0000313|EMBL:ABL98504.1}; Flags: Precursor;; TaxID=326297 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella amazonensis (strain ATCC BAA-1098 / SB2B).;"
SCNpilot_expt_1000_bf_scaffold_5850_5
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4243..5160)
DNA (918bp) protein (306aa)
Transcriptional regulator/sugar kinase n=1 Tax=Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG 23171 / LMG 9086) RepID=I4A0R7_ORNRL
ROK family transcriptional regulator {ECO:0000313|EMBL:AHW60270.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
transcriptional regulator/sugar kinase
SCNpilot_expt_1000_bf_scaffold_5850_6
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5409..6332)
DNA (924bp) protein (308aa)
LacI family transcriptional regulator n=1 Tax=Gilvimarinus chinensis RepID=UPI00037496D8
transcriptional regulator; K05499 LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
Transcriptional regulator {ECO:0000313|EMBL:ACE84104.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
SCNpilot_expt_1000_bf_scaffold_5850_7
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6514..6867
DNA (354bp) protein (118aa)
sodium:solute symporter n=1 Tax=Eudoraea adriatica RepID=UPI00037D5E29
Na+/glucose symporter
Na+/glucose symporter {ECO:0000313|EMBL:ADF50715.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
Displaying 7 items

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