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SCNpilot_expt_1000_bf_scaffold_14186

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_14186_1
unknown

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2..580
DNA (579bp) protein (193aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_14186_2
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(661..1437)
DNA (777bp) protein (259aa)
Transglutaminase n=1 Tax=Sphingomonas sp. LH128 RepID=J8SIY0_9SPHN rbh
Transglutaminase {ECO:0000313|EMBL:EJU12759.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_14186_3
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1434..1901)
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RU85_RHORT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC22310.1}; Flags: Precursor;; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_expt_1000_bf_scaffold_14186_4
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1923..3146)
DNA (1224bp) protein (408aa)
Catalase; K03781 catalase [EC:1.11.1.6]
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D0U6_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL49005.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
SCNpilot_expt_1000_bf_scaffold_14186_5
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3457..3666
DNA (210bp) protein (70aa)
Tax=RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated
SCNpilot_expt_1000_bf_scaffold_14186_6
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3778..4023
DNA (246bp) protein (82aa)
Catalase-2 domain protein {ECO:0000313|EMBL:AIO69498.1}; EC=1.11.1.6 {ECO:0000313|EMBL:AIO69498.1};; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016AA13E
SCNpilot_expt_1000_bf_scaffold_14186_7
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4209..4586
DNA (378bp) protein (126aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC25681.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
SCNpilot_expt_1000_bf_scaffold_14186_8
unknown

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4624..4812
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_14186_9
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5002..5280
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031C00BB
Uncharacterized protein {ECO:0000313|EMBL:KKC26580.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
SCNpilot_expt_1000_bf_scaffold_14186_10
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5433..5639
DNA (207bp) protein (69aa)
Cold-shock DNA-binding protein family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFB5_SPHWW
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABQ70981.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_14186_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5674..6045
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B78828
Sphingomonas taxi strain 30a NODE_48, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29707.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_1000_bf_scaffold_14186_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6050..6823)
DNA (774bp) protein (258aa)
molecular chaperone GroEL n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AECD
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
groEL; chaperonin GroEL; K04077 chaperonin GroEL
Displaying 12 items

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