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SCNpilot_expt_1000_bf_scaffold_4029

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4029_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18..593)
DNA (576bp) protein (192aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
ilvD; dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J0C2_9SPHN
SCNpilot_expt_1000_bf_scaffold_4029_2
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

840..1028
DNA (189bp) protein (63aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_expt_1000_bf_scaffold_4029_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2504..3187)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030DB56B
Enoyl-CoA hydratase {ECO:0000313|EMBL:AJP71438.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
methylglutaconyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_4029_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3370..4170)
DNA (801bp) protein (267aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Sphingomonas elodea RepID=UPI00026305E3 rbh
SCNpilot_expt_1000_bf_scaffold_4029_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4167..5597)
DNA (1431bp) protein (477aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FF653E rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP74308.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TPR repeat-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_4029_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7488..8204
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D8F2A0
Uncharacterized protein {ECO:0000313|EMBL:AJP71435.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
uracil-DNA glycosylase superfamily protein
SCNpilot_expt_1000_bf_scaffold_4029_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8207..10006
DNA (1800bp) protein (600aa)
lytic transglycosylase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000367A2D2 rbh
Lytic transglycosylase {ECO:0000313|EMBL:AIT05205.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
lytic transglycosylase subunit rbh
SCNpilot_expt_1000_bf_scaffold_4029_8
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10603..11115)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9BBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48660.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_4029_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11196..11585)
DNA (390bp) protein (130aa)
bleomycin resistance protein n=1 Tax=Sphingomonas elodea RepID=UPI000263215C
Bleomycin resistance protein {ECO:0000313|EMBL:AJP74307.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K06996
SCNpilot_expt_1000_bf_scaffold_4029_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11638..12708
DNA (1071bp) protein (357aa)
radical SAM protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F8B14F rbh
DNA repair photolyase {ECO:0000313|EMBL:AJP71432.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
radical SAM protein rbh
SCNpilot_expt_1000_bf_scaffold_4029_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12716..14527)
DNA (1812bp) protein (604aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036356A7 rbh
Sphingomonas taxi strain 30a NODE_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29887.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
G-D-S-L family lipolytic protein rbh
SCNpilot_expt_1000_bf_scaffold_4029_12
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14524..14832)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003777E81
Strain SA-120 Contig379, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01418.1}; Flags: Fragment;; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
G-D-S-L family lipolytic protein
SCNpilot_expt_1000_bf_scaffold_4029_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15175..17463
DNA (2289bp) protein (763aa)
peptidase M1 n=1 Tax=Sphingomonas elodea RepID=UPI0002632158 rbh
Peptidase M1 {ECO:0000313|EMBL:AJP71428.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M1, membrane alanine aminopeptidase-like protein
SCNpilot_expt_1000_bf_scaffold_4029_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17785..19377)
DNA (1593bp) protein (531aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
long-chain fatty acid--CoA ligase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000309553E rbh
Long-chain fatty acid--CoA ligase {ECO:0000313|EMBL:AJP74304.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4029_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19510..22980)
DNA (3471bp) protein (1157aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
dnaE; DNA polymerase III alpha subunit; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III subunit alpha n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E314F9 rbh
SCNpilot_expt_1000_bf_scaffold_4029_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23291..23773
DNA (483bp) protein (161aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP71425.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4029_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23778..24209
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP71424.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4029_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24306..25379)
DNA (1074bp) protein (358aa)
UPI0003D60177 related cluster n=1 Tax=unknown RepID=UPI0003D60177
Uncharacterized protein {ECO:0000313|EMBL:AHE52721.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4029_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25376..25675)
DNA (300bp) protein (100aa)
PadR family transcripitonal regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B78DB5
Uncharacterized protein {ECO:0000313|EMBL:AHE52720.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
putative PadR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4029_20
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25845..28613
DNA (2769bp) protein (923aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Sphingomonas elodea RepID=UPI000263164E rbh
SCNpilot_expt_1000_bf_scaffold_4029_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28752..29099
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000315C5CC
Uncharacterized protein {ECO:0000313|EMBL:AJP71172.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4029_22
unknown

Not on your lists

comp(29318..29521)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3B333
SCNpilot_expt_1000_bf_scaffold_4029_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29515..30006)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3B333
Uncharacterized protein {ECO:0000313|EMBL:AIT07635.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4029_24
unknown

Not on your lists

30068..30817
DNA (750bp) protein (250aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4029_25
unknown

Not on your lists

30869..31861
DNA (993bp) protein (331aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4029_26
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32465..32953)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3FBA9
Uncharacterized protein {ECO:0000313|EMBL:EZP55809.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_1000_bf_scaffold_4029_27
unknown

Not on your lists

comp(32982..33059)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 27 items

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