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SCNpilot_expt_1000_bf_scaffold_4043

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4043_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..841
DNA (840bp) protein (280aa)
transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035CCED1 rbh
Transcriptional regulator {ECO:0000313|EMBL:AJP72594.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_1000_bf_scaffold_4043_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

876..2108
DNA (1233bp) protein (411aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP74515.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035DE580 rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_4043_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2589..3089
DNA (501bp) protein (167aa)
intradiol ring-cleavage dioxygenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037A1861
Intradiol ring-cleavage dioxygenase {ECO:0000313|EMBL:AJP72595.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
intradiol ring-cleavage dioxygenase
SCNpilot_expt_1000_bf_scaffold_4043_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3142..3531)
DNA (390bp) protein (130aa)
response regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D9C97D
Response regulator {ECO:0000313|EMBL:AJP72597.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
PAS domain S-box
SCNpilot_expt_1000_bf_scaffold_4043_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3606..4040)
DNA (435bp) protein (145aa)
histidine kinase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDD6F
Histidine kinase {ECO:0000313|EMBL:AJP74516.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4043_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4007..6010)
DNA (2004bp) protein (668aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Sphingomonas elodea RepID=UPI00026313B3 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIT06442.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_4043_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6010..7449)
DNA (1440bp) protein (480aa)
signal peptide protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3CF rbh
Signal peptide protein {ECO:0000313|EMBL:AJP74517.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4043_8
Sphingomonas elodea, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7910..9214
DNA (1305bp) protein (435aa)
UDP-glucose dehydrogenase {ECO:0000313|EMBL:ABP01356.2}; EC=1.1.1.22 {ECO:0000313|EMBL:ABP01356.2};; TaxID=179878 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas elodea.;"
UDP-glucose 6-dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037A7E04 rbh
UDP-glucose-6-dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4043_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10081..11427
DNA (1347bp) protein (449aa)
glutamate/cysteine ligase (EC:6.3.2.2); K01919 glutamate--cysteine ligase [EC:6.3.2.2]
glutamate--cysteine ligase n=1 Tax=Sphingomonas elodea RepID=UPI0002632234 rbh
Glutamate--cysteine ligase {ECO:0000313|EMBL:AJP73018.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4043_10
unknown

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comp(11474..11713)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4043_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11913..12593
DNA (681bp) protein (227aa)
PAS domain S-box protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H7Y0_9BRAD
PAS domain S-box protein {ECO:0000313|EMBL:ERF80848.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
putative PAS/PAC sensor protein
SCNpilot_expt_1000_bf_scaffold_4043_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12678..13571
DNA (894bp) protein (298aa)
ATPase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H8Z5_9SPHN rbh
ATPase {ECO:0000313|EMBL:AJP72441.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
BadF/BadG/BcrA/BcrD type ATPase
SCNpilot_expt_1000_bf_scaffold_4043_13
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13561..15543
DNA (1983bp) protein (661aa)
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25); K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000380F2B1 rbh
SCNpilot_expt_1000_bf_scaffold_4043_14
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15552..16637)
DNA (1086bp) protein (362aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DF89
SCNpilot_expt_1000_bf_scaffold_4043_15
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16634..17533)
DNA (900bp) protein (300aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] rbh
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Sphingomonas paucimobilis RepID=Q842L6_SPHPI rbh
SCNpilot_expt_1000_bf_scaffold_4043_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17687..18646
DNA (960bp) protein (320aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
sulfate adenylyltransferase small subunit (EC:2.7.7.4) rbh
sulfate adenylyltransferase subunit 2 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003691E15 rbh
SCNpilot_expt_1000_bf_scaffold_4043_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18723..20636
DNA (1914bp) protein (638aa)
Adenylyltransferase {ECO:0000313|EMBL:AJP72600.1}; EC=2.7.1.25 {ECO:0000313|EMBL:AJP72600.1};; EC=2.7.7.4 {ECO:0000313|EMBL:AJP72600.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (EC:2.7.1.25 2.7.7.4); K00955 bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
adenylylsulfate kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030E6829 rbh
SCNpilot_expt_1000_bf_scaffold_4043_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20633..21352
DNA (720bp) protein (240aa)
inositol monophosphatase; K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
MFS transporter n=1 Tax=Sphingomonas elodea RepID=UPI00026313AF rbh
Inositol phosphatase {ECO:0000313|EMBL:AJP74518.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4043_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21582..22646
DNA (1065bp) protein (355aa)
lysine methyltransferase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDBB5 rbh
Lysine methyltransferase {ECO:0000313|EMBL:AJP72618.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
nuclear protein SET
SCNpilot_expt_1000_bf_scaffold_4043_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22716..24566)
DNA (1851bp) protein (617aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656, ECO:0000313|EMBL:AJP72619.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
histidine kinase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC8C3 rbh
signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_4043_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24566..25594)
DNA (1029bp) protein (343aa)
diguanylate cyclase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC8C4 rbh
Diguanylate cyclase {ECO:0000313|EMBL:AJP72620.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
response regulator receiver modulated diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_1000_bf_scaffold_4043_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25591..26427)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035F25F8
Diguanylate cyclase {ECO:0000313|EMBL:AJP72620.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
response regulator receiver modulated diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_4043_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26574..27443
DNA (870bp) protein (290aa)
Putative citrate lyase beta chain n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YND7_9SPHN rbh
Citrate lyase {ECO:0000313|EMBL:AJP72621.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
citrate lyase subunit beta rbh
SCNpilot_expt_1000_bf_scaffold_4043_24
unknown

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comp(27280..29229)
DNA (1950bp) protein (650aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4043_25
unknown

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29521..29631
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4043_26
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29628..29984
DNA (357bp) protein (119aa)
Response regulator n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG31_PHEZH
response regulator
Response regulator {ECO:0000313|EMBL:ACG77155.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_4043_27
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30061..32421)
DNA (2361bp) protein (787aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003653399 rbh
putative hemagglutinin-like protein
Putative hemagglutinin-like protein {ECO:0000313|EMBL:AEK62057.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
Displaying 27 items

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