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SCNpilot_expt_1000_bf_scaffold_4147

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4147_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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466..1011
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036E0147
RNA polymerase sigma factor {ECO:0000313|EMBL:KGB56848.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_4147_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1117..2856
DNA (1740bp) protein (580aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000376CB53 rbh
Magnesium chelatase subunit D {ECO:0000313|EMBL:KGB56847.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein; K07114 uncharacterized protein rbh
SCNpilot_expt_1000_bf_scaffold_4147_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3029..4180
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000362B42E
Uncharacterized protein {ECO:0000313|EMBL:AJA08125.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4147_4
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4238..5362)
DNA (1125bp) protein (375aa)
NADH oxidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030EFAD0 rbh
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32264.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
NADPH:quinone reductase
SCNpilot_expt_1000_bf_scaffold_4147_5
unknown

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5585..5752
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4147_6
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5903..6400)
DNA (498bp) protein (166aa)
TonB-dependent receptor, partial n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3AF
TonB-dependent receptor {ECO:0000313|EMBL:AJA08098.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_4147_7
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6402..8843)
DNA (2442bp) protein (814aa)
TonB-dependent receptor, partial n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3AF rbh
TonB-dependent receptor {ECO:0000313|EMBL:AJA08098.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
tonb-dependent receptor
SCNpilot_expt_1000_bf_scaffold_4147_8
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8937..9830)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003671CA8 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA08099.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
transcriptional regulator
Displaying 8 items

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