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SCNpilot_expt_1000_bf_scaffold_4255

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4255_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..563)
DNA (561bp) protein (187aa)
permease n=1 Tax=Sphingomonas elodea RepID=UPI0002630302
Permease {ECO:0000313|EMBL:AJP71076.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
citrate transporter
SCNpilot_expt_1000_bf_scaffold_4255_2
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(640..852)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F195ED
Uncharacterized protein {ECO:0000313|EMBL:EQB32451.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4255_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1010..1195
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP74232.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4255_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1223..1843)
DNA (621bp) protein (207aa)
putative phage repressor n=1 Tax=Sphingomonas elodea RepID=UPI0002631A4E
Phage repressor protein {ECO:0000313|EMBL:AJP70983.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative phage repressor
SCNpilot_expt_1000_bf_scaffold_4255_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1938..2144
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC51D
Uncharacterized protein {ECO:0000313|EMBL:AJP70982.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4255_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2141..2458
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD1B4
Uncharacterized protein {ECO:0000313|EMBL:AJP70981.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4255_7
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2523..3623)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0EA
Uncharacterized protein {ECO:0000313|EMBL:EZP55356.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
Pc22g03720
SCNpilot_expt_1000_bf_scaffold_4255_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3620..4864)
DNA (1245bp) protein (415aa)
glycosyl transferase family 1 n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0E9 rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:AJP70980.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
group 1 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_4255_9
unknown

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4952..5104
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4255_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5097..6449
DNA (1353bp) protein (451aa)
polymerase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DCC rbh
Polymerase {ECO:0000313|EMBL:AJP70979.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4255_11
unknown

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comp(6380..7342)
DNA (963bp) protein (321aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4255_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7600..8619
DNA (1020bp) protein (340aa)
putative DNA topoisomerase IB; K03168 DNA topoisomerase I [EC:5.99.1.2] rbh
DNA topoisomerase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DCF rbh
DNA topoisomerase {ECO:0000313|EMBL:AJP70977.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4255_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8616..9758
DNA (1143bp) protein (381aa)
mechanosensitive ion channel protein MscS n=1 Tax=Sphingomonas elodea RepID=UPI0002631DD0
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:AJP70976.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative mechanosensitive ion channel
SCNpilot_expt_1000_bf_scaffold_4255_14
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9779..10156
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCN0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:AJA09512.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
Displaying 14 items

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