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SCNpilot_expt_1000_bf_scaffold_4845

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4845_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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165..569
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4F7A1
Uncharacterized protein {ECO:0000313|EMBL:EGD60568.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4845_2
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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604..2886
DNA (2283bp) protein (761aa)
Outer membrane receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G0H6_9SPHN rbh
Outer membrane receptor protein {ECO:0000313|EMBL:EJL23045.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_1000_bf_scaffold_4845_3
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2883..4277
DNA (1395bp) protein (465aa)
Putative iron-regulated membrane protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZUQ8_9SPHN rbh
Putative iron-regulated membrane protein {ECO:0000313|EMBL:EJL23046.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
PepSY-associated TM helix family protein rbh
SCNpilot_expt_1000_bf_scaffold_4845_4
unknown

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comp(4323..5966)
DNA (1644bp) protein (548aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4845_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6535..8145
DNA (1611bp) protein (537aa)
Polysaccharide deacetylase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RW58_9SPHN
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:AGH47940.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_4845_6
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7977..9902)
DNA (1926bp) protein (642aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
Putative two-component histidine kinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A6Y8_9SPHN rbh
cpxA; signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_4845_7
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9904..10587)
DNA (684bp) protein (228aa)
Two-component system response regulator CusR n=2 Tax=Sphingobium RepID=D4YYW9_SPHJU rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:AJR24438.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
cusR; two-component system response regulator CusR; K02483 two-component system, OmpR family, response regulator rbh
SCNpilot_expt_1000_bf_scaffold_4845_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10556..11032)
DNA (477bp) protein (159aa)
2-alkenal reductase (EC:1.3.1.74)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YAQ1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50506.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_4845_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11142..11858
DNA (717bp) protein (239aa)
Type IV secretory pathway VirJ component-like protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RWK9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53137.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Type IV secretory pathway VirJ component-like protein
SCNpilot_expt_1000_bf_scaffold_4845_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11930..12352
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BEB9
Uncharacterized protein {ECO:0000313|EMBL:KFD26102.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4845_11
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12301..14931
DNA (2631bp) protein (877aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZ44_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AGH47943.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
hypothetical protein rbh
Displaying 11 items

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