ggKbase home page

SCNpilot_expt_1000_bf_scaffold_19163

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_19163_1
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..327
DNA (327bp) protein (109aa)
beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]
beta-glucosidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030DA2C4
Uncharacterized protein {ECO:0000313|EMBL:ESQ87886.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
SCNpilot_expt_1000_bf_scaffold_19163_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(372..1379)
DNA (1008bp) protein (336aa)
oxidoreductase n=1 Tax=Sphingomonas elodea RepID=UPI000263029F rbh
Oxidoreductase {ECO:0000313|EMBL:AJP71738.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_19163_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1488..2387)
DNA (900bp) protein (300aa)
Oxidoreductase family, NAD-binding Rossmann fold n=1 Tax=uncultured organism RepID=T1W9S5_9ZZZZ rbh
Oxidoreductase {ECO:0000313|EMBL:AJP71739.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative dehydrogenase
SCNpilot_expt_1000_bf_scaffold_19163_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2834..3979)
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000381169F rbh
Oxidoreductase {ECO:0000313|EMBL:AJP71740.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
oxidoreductase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_19163_5

Not on your lists

comp(3997..4242)
DNA (246bp) protein (82aa)
Cupin domain n=1 Tax=uncultured organism RepID=T1W9B8_9ZZZZ
Cupin domain {ECO:0000313|EMBL:AGU11276.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
cupin
SCNpilot_expt_1000_bf_scaffold_19163_6
unknown

Not on your lists

4913..6535
DNA (1623bp) protein (541aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_19163_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6463..7155)
DNA (693bp) protein (231aa)
acylhydrolase n=1 Tax=Sphingomonas elodea RepID=UPI0002630533
GDSL family lipase {ECO:0000313|EMBL:AJP71742.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
lysophospholipase L1-like esterase
SCNpilot_expt_1000_bf_scaffold_19163_8
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7407..8033)
DNA (627bp) protein (209aa)
MFS transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002630534 rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:KGB51632.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
major facilitator transporter; K02429 MFS transporter, FHS family, L-fucose permease
Displaying 8 items

View Taxonomy