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SCNpilot_expt_1000_bf_scaffold_5589_5

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 4 ASCG 9 / 38 MC: 1
Location: 5691..6275

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VJA9_CAUST similarity UNIREF
DB: UNIREF100
  • Identity: 50.0
  • Coverage: 170.0
  • Bit_score: 180
  • Evalue 2.30e-42
Uncharacterized protein {ECO:0000313|EMBL:AJA09088.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.7
  • Coverage: 190.0
  • Bit_score: 215
  • Evalue 9.00e-53
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 50.0
  • Coverage: 170.0
  • Bit_score: 180
  • Evalue 7.20e-43

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Taxonomy

Sphingopyxis fribergensis → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
GTGAGGCAGGATCGCGCCGAACTGGTAGCCTGGGTTGCGGGGAATGTCGTTCCGCACGAAAGCGCGGTGCGCGACAAGCTGCGCTCGGTCGGCGTCCCCGAATACGAGATCGACGATATCATGCAGGACGCATATTTGAGAATCTCGCACCTCGATAGCGTGGCGCATATTCGCAATGGGCGTGGCTATCTGTTCACCGTGGCGCGCTCGGCGATGCTGCTGCGCGTGCGGCGCGAGCGGATCGTACGGATCGACAGCCTCTCCGATTATGATGAGCTGACGCTCGCCGACGACGATCCAGGACCCGAGCGCCATGCGGCGGCAAGGATCGATCTCGAGCGGGTCCATCGGATGATCGCGTCCCTTCCCTCGCCCTGCCGGGAAATTTTCGAGATGCGGCGGATCGAAGGCGTGCCGCAGCGAGAGATTGCCGCTCGGATGGGCGTTTCGGAGCATATCGTCGAAAAGCTCTCGGCCCGTGGATTGCGATTGATCTTGAAGGCCATCGCGGGCGGCAATCGTGAAGCCGCCAGCCCGGCAAAACAGCGTATCGAAAGGAAACTGCGTGACGTCGGCTTCGAATGA
PROTEIN sequence
Length: 195
VRQDRAELVAWVAGNVVPHESAVRDKLRSVGVPEYEIDDIMQDAYLRISHLDSVAHIRNGRGYLFTVARSAMLLRVRRERIVRIDSLSDYDELTLADDDPGPERHAAARIDLERVHRMIASLPSPCREIFEMRRIEGVPQREIAARMGVSEHIVEKLSARGLRLILKAIAGGNREAASPAKQRIERKLRDVGFE*