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SCNpilot_expt_1000_bf_scaffold_2558

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2558_1
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

692..1189
DNA (498bp) protein (166aa)
nitric oxide reductase; K04561 nitric oxide reductase subunit B [EC:1.7.2.5]
hypothetical protein, partial n=1 Tax=Methylocystis parvus RepID=UPI00036494EC
Cytochrome C and Quinol oxidase polypeptide I family protein {ECO:0000313|EMBL:AIP28580.1}; Nitric oxide reductase {ECO:0000313|EMBL:ABC34641.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
SCNpilot_expt_1000_bf_scaffold_2558_2
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1332..1799
DNA (468bp) protein (156aa)
Truncated hemoglobin protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAJ0_PHEZH
truncated hemoglobin protein; K06886 hemoglobin
Truncated hemoglobin protein {ECO:0000313|EMBL:ACG79588.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_2558_3
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1796..2146
DNA (351bp) protein (117aa)
4Fe-4S ferredoxin, iron-sulfur binding protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11CX6_MESSB
4Fe-4S ferredoxin; K05524 ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:ABG64749.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2558_4

Not on your lists

2335..2721
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035F4B60
Uncharacterized protein {ECO:0000313|EMBL:KKO12687.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2558_5
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2735..3157)
DNA (423bp) protein (141aa)
nucleoside diphosphate kinase regulator n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000346C882
Nucleoside diphosphate kinase regulator {ECO:0000313|EMBL:KJR64054.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
GreA/GreB family elongation factor; K06140 regulator of nucleoside diphosphate kinase
SCNpilot_expt_1000_bf_scaffold_2558_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3170..3649)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003741716
Uncharacterized protein {ECO:0000313|EMBL:EKS41073.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2558_7
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3945..4655
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003715452
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO40152.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2558_8
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4658..5239
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI000382441A
Uncharacterized protein {ECO:0000313|EMBL:KER35315.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2558_9
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5381..5734
DNA (354bp) protein (118aa)
Cytochrome c2 n=1 Tax=Sphingobium indicum B90A RepID=I5BGR2_9SPHN
Cytochrome c2 {ECO:0000313|EMBL:EIM68764.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
cytochrome c class I; K08738 cytochrome c
SCNpilot_expt_1000_bf_scaffold_2558_10
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5753..7546)
DNA (1794bp) protein (598aa)
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase {ECO:0000255|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000255|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000255|HAMAP-Rule:MF_00012};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
dihydroxy-acid dehydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036A7E64
SCNpilot_expt_1000_bf_scaffold_2558_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7749..8396
DNA (648bp) protein (216aa)
ribonuclease D (EC:3.1.26.3); K03684 ribonuclease D [EC:3.1.13.5]
Ribonuclease D n=1 Tax=Oceanibaculum indicum P24 RepID=K2K1Y7_9PROT
Ribonuclease D {ECO:0000313|EMBL:EKE76879.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_expt_1000_bf_scaffold_2558_12
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9137..9568
DNA (432bp) protein (144aa)
phosphosugar isomerase; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
Phosphosugar isomerase n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TJ45_PHAFV
Phosphosugar isomerase {ECO:0000313|EMBL:EPY02251.1}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
SCNpilot_expt_1000_bf_scaffold_2558_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9568..10263
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPI5_PARL1
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
Uncharacterized protein {ECO:0000313|EMBL:ABS61818.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_2558_14
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10260..10799
DNA (540bp) protein (180aa)
Lipopolysaccharide transport periplasmic protein LptA n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1Q0_9BRAD
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
OstA-like protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_expt_1000_bf_scaffold_2558_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10841..11641
DNA (801bp) protein (267aa)
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J1L1_9PROT rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKE76876.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_expt_1000_bf_scaffold_2558_16
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11666..13183
DNA (1518bp) protein (506aa)
RNA polymerase sigma-54 factor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ3_PHEZH rbh
rpoN; RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_2558_17
alpha proteobacterium RS24, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13316..13645
DNA (330bp) protein (110aa)
Gluconokinase protein {ECO:0000313|EMBL:ERL46765.1}; EC=2.7.1.12 {ECO:0000313|EMBL:ERL46765.1};; TaxID=1397666 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium RS24.;"
Gluconokinase protein n=1 Tax=alpha proteobacterium RS24 RepID=U2WT98_9PROT
sigma-54 modulation protein
SCNpilot_expt_1000_bf_scaffold_2558_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13667..14140
DNA (474bp) protein (158aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPI0_PARL1
PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:ABS61813.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_2558_19
unknown

Not on your lists

comp(14219..14485)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2558_20
unknown

Not on your lists

comp(14482..14607)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2558_21
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14604..15041)
DNA (438bp) protein (146aa)
Heat shock protein Hsp20 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPH8_PARL1
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ABS61811.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_2558_22
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15274..17046
DNA (1773bp) protein (591aa)
Para-aminobenzoate synthase subunit I; K03342 para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] rbh
Para-aminobenzoate synthase, subunit I n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J996_HYPSM rbh
Para-aminobenzoate synthase, subunit I {ECO:0000313|EMBL:CCB67413.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_2558_23
unknown

Not on your lists

comp(17105..17488)
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2558_24
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17485..18969)
DNA (1485bp) protein (495aa)
oxidoreductase n=1 Tax=Burkholderia bryophila RepID=UPI0003764870 rbh
GMC oxidoreductase {ECO:0000313|EMBL:KIG07717.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
GMC oxidoreductase rbh
Displaying 24 items

View Taxonomy