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SCNpilot_expt_1000_bf_scaffold_11992

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11992_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..402)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002D8F4D5
Uncharacterized protein {ECO:0000313|EMBL:GAO56244.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11992_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(434..1087)
DNA (654bp) protein (218aa)
ribonuclease Z; K00784 ribonuclease Z [EC:3.1.26.11]
Beta-lactamase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HT38_PARL1
Beta-lactamase domain protein {ECO:0000313|EMBL:ABS63071.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_11992_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1056..1580)
DNA (525bp) protein (175aa)
ribonuclease Z; K00784 ribonuclease Z [EC:3.1.26.11]
Beta-lactamase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HT38_PARL1
Beta-lactamase domain protein {ECO:0000313|EMBL:ABS63071.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_11992_4
unknown

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2097..2294
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11992_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2480..3172)
DNA (693bp) protein (231aa)
Putative monooxygenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A7I3_9SPHN
Putative monooxygenase {ECO:0000313|EMBL:GAD50713.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
4-hydroxyacetophenone monooxygenase
SCNpilot_expt_1000_bf_scaffold_11992_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3144..3890)
DNA (747bp) protein (249aa)
Putative monooxygenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A7I3_9SPHN
Putative monooxygenase {ECO:0000313|EMBL:GAD50713.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
monooxygenase
SCNpilot_expt_1000_bf_scaffold_11992_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4244..5785
DNA (1542bp) protein (514aa)
long-chain-fatty-acid--CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] rbh
AMP-dependent synthetase and ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR94_PARL1 rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABS62427.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_11992_8
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5782..6555)
DNA (774bp) protein (258aa)
alpha-L-fucosidase (EC:3.2.1.51); K01206 alpha-L-fucosidase [EC:3.2.1.51]
Alpha-L-fucosidase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NM77_ROSCS
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_11992_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7237..8268)
DNA (1032bp) protein (344aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIA5_9GAMM rbh
nucleoside-diphosphate-sugar epimerase rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGG89403.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_11992_10
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8422..8628)
DNA (207bp) protein (69aa)
UPF0061 protein BRAS3843_190020 n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKJ1_9BRAD
UPF0061 protein BRAS3843_190020 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11992_11
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9357..9884)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037D7154
UPF0061 protein MOC_5592 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11992_12
unknown

Not on your lists

comp(11127..11285)
DNA (159bp) protein (53aa)

This feature has no annotations

Displaying 12 items

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