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SCNpilot_expt_1000_bf_scaffold_3796

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3796_1
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..665
DNA (663bp) protein (221aa)
pyruvate carboxyltransferase; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Sphingomonas sp. LH128 RepID=J8SBG8_9SPHN
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:EZP82709.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_1000_bf_scaffold_3796_2
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(670..906)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI0003702A51
enoyl-CoA hydratase/isomerase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_1000_bf_scaffold_3796_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(906..1451)
DNA (546bp) protein (182aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTF3_PARL1
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABS63186.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3796_4
Pseudomonas sp. GM24, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1540..1773)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas putida (strain W619) RepID=B1J629_PSEPW
hypothetical protein
Putative metal-dependent hydrolase {ECO:0000313|EMBL:EJM31053.1}; TaxID=1144326 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM24.;"
SCNpilot_expt_1000_bf_scaffold_3796_5
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1770..2501)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EG40_9BURK
Metal-dependent hydrolase {ECO:0000313|EMBL:KDP88529.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3796_6
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2634..3311)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI00038065D7
TetR family transcriptional regulator {ECO:0000313|EMBL:KCZ89783.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3796_7
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3951..5228
DNA (1278bp) protein (426aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00111}; EC=2.5.1.7 {ECO:0000255|HAMAP-Rule:MF_00111};; Enoylpyruvate transferase {ECO:0000255|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000255|HAMAP-Rule:MF_00111}; Short=EPT {ECO:0000255|HAMAP-Rule:MF_00111};; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DF
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=MURA_DINSH rbh
SCNpilot_expt_1000_bf_scaffold_3796_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5228..5668
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQG0_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62143.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3796_9
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5619..6965
DNA (1347bp) protein (449aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
hisD; histidinol dehydrogenase (EC:1.1.1.23); K00013 histidinol dehydrogenase [EC:1.1.1.23]
Histidinol dehydrogenase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZQV2_9PROT
SCNpilot_expt_1000_bf_scaffold_3796_10
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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6962..7441
DNA (480bp) protein (160aa)
UPF0262 protein Plav_0522 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQG2_PARL1
UPF0262 protein M2A_3019 {ECO:0000256|HAMAP-Rule:MF_00678}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3796_11
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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7446..7892
DNA (447bp) protein (149aa)
Arsenate reductase {ECO:0000313|EMBL:CDO60262.1}; EC=1.20.4.1 {ECO:0000313|EMBL:CDO60262.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Protein-tyrosine-phosphatase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W1Y1_MAGSA
protein-tyrosine-phosphatase
SCNpilot_expt_1000_bf_scaffold_3796_12
Hyphomonas adhaerens, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7977..8195
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=IF1_HYPNA
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1280949 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas adhaerens MHS-3.;"
SCNpilot_expt_1000_bf_scaffold_3796_13
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8212..8796
DNA (585bp) protein (195aa)
septum formation protein Maf n=1 Tax=Ponticaulis koreensis RepID=UPI0003B358F2
nucleotide-binding protein implicated in inhibition of septum formation; K06287 septum formation protein
Maf-like protein PHZ_c2194 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_3796_14
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8828..9280
DNA (453bp) protein (151aa)
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-]
Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQG8_PARL1
Ribonuclease {ECO:0000313|EMBL:GAK46525.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_expt_1000_bf_scaffold_3796_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9297..10226
DNA (930bp) protein (310aa)
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-]
Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQG8_PARL1
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:ABS62151.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3796_16
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10235..10459
DNA (225bp) protein (75aa)
DNA gyrase inhibitor YacG n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DQP3_BRAJP
hypothetical protein; K09862 hypothetical protein
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
Displaying 16 items

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