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SCNpilot_expt_1000_bf_scaffold_7492

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7492_1

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3..119
DNA (117bp) protein (39aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
Enoyl-[acyl-carrier-protein] reductase (NADH) n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9RX05_9RHOB
SCNpilot_expt_1000_bf_scaffold_7492_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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109..738
DNA (630bp) protein (210aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IMJ9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF83899.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_expt_1000_bf_scaffold_7492_3

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750..1766
DNA (1017bp) protein (339aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ87_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7492_4
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1864..2424)
DNA (561bp) protein (187aa)
Peptidase, C13 family n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GXU7_CAUCN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK24075.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_1000_bf_scaffold_7492_5

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comp(3818..5743)
DNA (1926bp) protein (642aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR71_PARL1
SCNpilot_expt_1000_bf_scaffold_7492_6

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comp(5990..6250)
DNA (261bp) protein (87aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease VII small subunit n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGK2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7492_7
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6253..7200)
DNA (948bp) protein (316aa)
Acetylspermidine deacetylase {ECO:0000313|EMBL:ESR24751.1}; EC=3.5.1.48 {ECO:0000313|EMBL:ESR24751.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
acetoin utilization protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B451FC
putative deacetylase
SCNpilot_expt_1000_bf_scaffold_7492_8
unknown

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comp(7197..7556)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7492_9
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7878..9269
DNA (1392bp) protein (464aa)
TonB-dependent receptor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHU9_PHEZH
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACG79140.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_7492_10
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9283..10218
DNA (936bp) protein (312aa)
TonB-dependent receptor n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVZ5_9PROT
TonB-dependent receptor {ECO:0000313|EMBL:EGY02561.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
TonB-dependent receptor
Displaying 10 items

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