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SCNpilot_expt_1000_bf_scaffold_3348

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3348_1
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..593)
DNA (591bp) protein (197aa)
choline dehydrogenase id=12552939 bin=BDI species=Pseudomonas aeruginosa genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_3348_2
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1036..1908
DNA (873bp) protein (291aa)
acetyl-CoA carboxylase n=1 Tax=Methylocystis rosea RepID=UPI00037B4248
carbamoyl-phosphate synthase ATP-binding subunit L
Carbamoyl-phosphate synthase L chain ATP-binding {ECO:0000313|EMBL:CCJ08649.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_3348_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1915..2346)
DNA (432bp) protein (144aa)
Mll2702 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HU9_RHILO
Uncharacterized protein {ECO:0000313|EMBL:KFG70610.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3348_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2460..2972
DNA (513bp) protein (171aa)
AIG2-like family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKN8_9RHIZ
AIG2-like family protein {ECO:0000313|EMBL:KFC67479.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
AIG2 family protein
SCNpilot_expt_1000_bf_scaffold_3348_5
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2849..3700)
DNA (852bp) protein (284aa)
lipB; Octanoyltransferase (Lipoate-protein ligase B) (Lipoyl/octanoyl transferase) (EC:2.3.1.181)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="M
Octanoyltransferase n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q8R2_METSZ
SCNpilot_expt_1000_bf_scaffold_3348_6
unknown

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comp(4560..5708)
DNA (1149bp) protein (383aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3348_7
unknown

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5947..6369
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3348_8
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6527..6745
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXR8_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL62900.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_3348_9
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6745..8181
DNA (1437bp) protein (479aa)
Outer membrane efflux protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXR7_METNO rbh
outer membrane efflux protein rbh
Outer membrane efflux protein {ECO:0000313|EMBL:ACL62899.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_3348_10
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8195..9592
DNA (1398bp) protein (466aa)
Multicopper oxidase type 3 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXR6_METNO rbh
multicopper oxidase type 3 rbh
Multicopper oxidase type 3 {ECO:0000313|EMBL:ACL62898.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_3348_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9604..10074
DNA (471bp) protein (157aa)
copper tolerance protein n=1 Tax=Afipia birgiae RepID=UPI0002F87BCE
Copper tolerance protein {ECO:0000313|EMBL:ETR79440.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
blue (type 1) copper domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3348_12
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10114..10398
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IP79_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS69825.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_3348_13
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10607..11425
DNA (819bp) protein (273aa)
glycoside hydrolase family 25 n=1 Tax=Methylosinus sp. LW4 RepID=UPI000373C21F rbh
glycoside hydrolase family 25 rbh
Glycoside hydrolase family 25 {ECO:0000313|EMBL:CCJ07232.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_3348_14
unknown

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11483..11638
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3348_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11783..12352)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIY9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39505.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3348_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(12705..12953)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C6K7_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ39632.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
Displaying 16 items

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