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SCNpilot_expt_1000_bf_scaffold_3683

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3683_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1063
DNA (1062bp) protein (354aa)
S-adenosyl-L-methionine dependent methyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QN62_9BRAD
S-adenosyl-L-methionine dependent methyltransferase {ECO:0000313|EMBL:EGP07277.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
cyclopropane-fatty-acyl-phospholipid synthase
SCNpilot_expt_1000_bf_scaffold_3683_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1171..2202
DNA (1032bp) protein (344aa)
cysteine synthase; K01738 cysteine synthase A [EC:2.5.1.47]
Cysteine synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSM3_9RHIZ
Cysteine synthase {ECO:0000313|EMBL:EIM26965.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_1000_bf_scaffold_3683_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2207..2692)
DNA (486bp) protein (162aa)
cupin n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035F2DDF
Cupin {ECO:0000313|EMBL:ETR78752.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3683_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2689..3456)
DNA (768bp) protein (256aa)
hypothetical protein; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] rbh
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D593_BRAJP rbh
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:KGT74726.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_expt_1000_bf_scaffold_3683_5
'Deinococcus soli' Cha et al. 2014, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(3586..4365)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Deinococcus aquatilis RepID=UPI00035C8132
Uncharacterized protein {ECO:0000313|EMBL:AKH16875.1}; TaxID=1309411 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="'Deinococcus soli' Cha et al. 2014.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3683_6
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4423..4878)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2UXZ1_9RHIZ
PaaI protein {ECO:0000313|EMBL:BAQ49772.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
Thioesterase superfamily protein
SCNpilot_expt_1000_bf_scaffold_3683_7
unknown

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comp(4947..5042)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3683_8
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5149..6009
DNA (861bp) protein (287aa)
rhodanese-related sulfurtransferase; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
3-mercaptopyruvate sulfurtransferase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000380152A
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_expt_1000_bf_scaffold_3683_9
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6242..6580
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037AC0D5
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CCJ06102.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_3683_10
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6645..7757
DNA (1113bp) protein (371aa)
glutamine synthetase, type I; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Glutamine synthetase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJI4_BEII9
SCNpilot_expt_1000_bf_scaffold_3683_11
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7703..8038
DNA (336bp) protein (112aa)
glutamine synthetase, type I; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Glutamine synthetase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJI4_BEII9
SCNpilot_expt_1000_bf_scaffold_3683_12
unknown

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comp(8113..8301)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3683_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8505..10466
DNA (1962bp) protein (654aa)
Putative phosphatase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKS0_9RHIZ rbh
Putative phosphatase {ECO:0000313|EMBL:EIM24562.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
twin-arginine translocation pathway signal; K07093
SCNpilot_expt_1000_bf_scaffold_3683_14
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10604..12664
DNA (2061bp) protein (687aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02622 topoisomerase IV subunit B [EC:5.99.1.-] rbh
DNA topoisomerase 4 subunit B n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJI3_BEII9 rbh
SCNpilot_expt_1000_bf_scaffold_3683_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12950..14587)
DNA (1638bp) protein (546aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036EE1B5
Peptide/nickel transport system substrate-binding protein {ECO:0000313|EMBL:ERF84472.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
TonB-dependent receptor plug
Displaying 15 items

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