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SCNpilot_expt_1000_bf_scaffold_9096

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9096_1
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..666)
DNA (666bp) protein (222aa)
aminoglycoside phosphotransferase; K00897 aminoglycoside 3'-phosphotransferase [EC:2.7.1.95]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035FD98A
Aminoglycoside 3'-phosphotransferase {ECO:0000313|EMBL:ETR77329.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_1000_bf_scaffold_9096_2
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1292..2491
DNA (1200bp) protein (400aa)
ABC-type anion transport system, duplicated permease component n=1 Tax=Rhizobium sp. AP16 RepID=J2KXV7_9RHIZ
Sulfonate ABC transporter permease {ECO:0000313|EMBL:KJF74845.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
sugar ABC transporter; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_9096_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3276..4415
DNA (1140bp) protein (380aa)
Putative nitrate/nitrite/cyanate ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKJ6_RHITR
putative nitrate/nitrite/cyanate ABC transporter, ATP-binding protein
Putative nitrate/nitrite/cyanate ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB71767.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_9096_4
unknown

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4461..4787
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9096_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4790..5518
DNA (729bp) protein (243aa)
Mg(2+) transport ATPase protein, MgtC family protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U5E9_9RHIZ rbh
Mg(2+) transport ATPase protein, MgtC family protein {ECO:0000313|EMBL:ENN87844.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
MgtC-magnesium transport family protein; K07507 putative Mg2+ transporter-C (MgtC) family protein
SCNpilot_expt_1000_bf_scaffold_9096_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5601..6674
DNA (1074bp) protein (358aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
Histidine kinase n=1 Tax=Rhizobium sp. AP16 RepID=J2CSC0_9RHIZ rbh
serine/threonine kinase of two-component system rbh
SCNpilot_expt_1000_bf_scaffold_9096_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6664..7281
DNA (618bp) protein (206aa)
Two-component nodulation response regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JI32_AGRRK
nodW; two-component nodulation response regulator protein
Nodulation protein W {ECO:0000313|EMBL:KEA08105.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_9096_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7285..7761)
DNA (477bp) protein (159aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V128_VARPE
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU39051.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_1000_bf_scaffold_9096_9
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7763..8149)
DNA (387bp) protein (129aa)
Transcriptional regulator, LysR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8P8_SPHWW
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABQ68664.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_9096_10
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8407..9402
DNA (996bp) protein (332aa)
methionine synthase, vitamin-B12 independent; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HZI1_9PSEU
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_expt_1000_bf_scaffold_9096_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9399..10388
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CGV5_AGRT5
hypothetical protein; K02051 NitT/TauT family transport system substrate-binding protein
Pyrimidine biosynthesis enzyme THI11 {ECO:0000313|EMBL:KJX85703.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_9096_12
unknown

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10404..10721
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9096_13
unknown

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comp(10625..10990)
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9096_14
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11268..12089
DNA (822bp) protein (274aa)
ABC transporter related n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IME8_METNO
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGJ08349.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_9096_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12082..12894
DNA (813bp) protein (271aa)
Binding-protein-dependent transport system inner membrane component family protein 65 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HHC9_ACHXA
binding-protein-dependent transporter inner membrane component family protein 65; K02050 NitT/TauT family transport system permease protein
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_expt_1000_bf_scaffold_9096_16
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12900..13259)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VWX7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM34454.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9096_17
unknown

Not on your lists

13597..14757
DNA (1161bp) protein (387aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9096_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14814..15620)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00038235B1
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIZ47517.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ATP-binding ABC transporter protein; K05847 osmoprotectant transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_9096_19
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15658..16179)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZJT0_METPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB81565.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_expt_1000_bf_scaffold_9096_20
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16631..17911)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBS2_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:AHB48321.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_9096_21
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18277..19278)
DNA (1002bp) protein (334aa)
Bacterial extracellular solute-binding protein, family 7 n=1 Tax=Roseobacter sp. GAI101 RepID=B7RS98_9RHOB rbh
Trap dicarboxylate transporter, dctp subunit
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_9096_22
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19307..19783)
DNA (477bp) protein (159aa)
Metapyrocatechase 2 n=1 Tax=Roseobacter sp. GAI101 RepID=B7RS94_9RHOB
Metapyrocatechase {ECO:0000313|EMBL:KFI29957.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
glyoxalase
SCNpilot_expt_1000_bf_scaffold_9096_23
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20253..21113)
DNA (861bp) protein (287aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) rbh
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Burkholderia cenocepacia (strain HI2424) RepID=A0B4Z8_BURCH rbh
Fumarylacetoacetate (FAA) hydrolase family protein {ECO:0000313|EMBL:AIO22530.1}; TaxID=983594 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia ATCC 25416.;"
SCNpilot_expt_1000_bf_scaffold_9096_24
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21251..21955
DNA (705bp) protein (235aa)
GntR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B8E2
Transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_expt_1000_bf_scaffold_9096_25
unknown

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22322..22495
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 25 items

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