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SCNpilot_expt_1000_bf_scaffold_9437

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9437_1
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(67..1404)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003791EF8
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:ACB96411.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_9437_2
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1404..2327)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035D5CC4 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACK49755.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_9437_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2331..2507)
DNA (177bp) protein (59aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-]
ATPase associated with various cellular activities AAA_3 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V912_9BRAD
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:EFI50650.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_9437_4
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2851..3567
DNA (717bp) protein (239aa)
Strain SA-120 Contig453, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01348.1}; Flags: Fragment;; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
SCNpilot_expt_1000_bf_scaffold_9437_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3604..4197
DNA (594bp) protein (198aa)
Proteophosphoglycan n=1 Tax=Rhodovulum sp. PH10 RepID=J5PLM6_9RHOB
Proteophosphoglycan {ECO:0000313|EMBL:EJW11582.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein; K09986 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9437_6
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4194..4877
DNA (684bp) protein (228aa)
Putative NUDIX hydrolase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RYT2_9BRAD
Putative NUDIX hydrolase {ECO:0000313|EMBL:CCD87109.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_9437_7
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4874..6151
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037389BE rbh
polynucleotide adenylyltransferase region rbh
Polynucleotide adenylyltransferase region {ECO:0000313|EMBL:CCJ05721.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_9437_8
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6223..6492
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000379588D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ05691.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_9437_9
bacterium YEK0313, Bacteria

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7197..7787
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TL60_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CEJ12381.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9437_10
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7784..8395)
DNA (612bp) protein (204aa)
short-chain dehydrogenase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000360CB85
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACK49762.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_9437_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8824..9120
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000368032A
Membrane protein {ECO:0000313|EMBL:KEA09014.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ropB2; outer membrane protein
SCNpilot_expt_1000_bf_scaffold_9437_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9117..9509
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F3675B
Uncharacterized protein {ECO:0000313|EMBL:KKB86073.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
outer-membrane immunogenic protein
SCNpilot_expt_1000_bf_scaffold_9437_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9569..9898)
DNA (330bp) protein (110aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037FBB76
DNA methylase; K07115
SCNpilot_expt_1000_bf_scaffold_9437_14
unknown

Not on your lists

10085..10459
DNA (375bp) protein (125aa)

This feature has no annotations

Displaying 14 items

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