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SCNpilot_expt_1000_bf_scaffold_5947

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5947_1
blood disease bacterium R229, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..256)
DNA (255bp) protein (85aa)
Conserved hypothethical protein, NAD(P)-binding Rossmann-fold domains n=1 Tax=blood disease bacterium R229 RepID=G2ZNV0_9RALS
Conserved hypothethical protein, NAD(P)-binding Rossmann-fold domains {ECO:0000313|EMBL:CCA80724.1}; TaxID=741978 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="blood disease bacterium R229.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5947_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

346..615
DNA (270bp) protein (90aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000375B3E6
Transcriptional regulator {ECO:0000313|EMBL:EJC80462.1}; Flags: Precursor;; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5947_3
unknown

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comp(594..1079)
DNA (486bp) protein (162aa)
UPI0003CF7D70 related cluster n=1 Tax=unknown RepID=UPI0003CF7D70
SCNpilot_expt_1000_bf_scaffold_5947_4
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1240..1899
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036EF742
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CCJ07457.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_5947_5
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2137..2730
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDT8_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96870.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_5947_6
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2943..3524
DNA (582bp) protein (194aa)
cytochrome B561 n=1 Tax=Methylocystis rosea RepID=UPI00037B2A93
DedA family protein
DedA family protein {ECO:0000313|EMBL:CCJ05948.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_5947_7
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3524..4009
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035EE77A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB94408.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_5947_8
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4027..5133)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035DC29D
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EMS41736.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
type IV pilus assembly PilZ
SCNpilot_expt_1000_bf_scaffold_5947_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5312..6295)
DNA (984bp) protein (328aa)
Outer membrane protein V n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZD9_9RHIZ
Outer membrane protein V {ECO:0000313|EMBL:EIM29331.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
mipA; MltA-interacting protein
SCNpilot_expt_1000_bf_scaffold_5947_10
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6414..7628)
DNA (1215bp) protein (405aa)
radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] rbh
Dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; TaxID=3
50S rRNA methyltransferase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000380A497 rbh
SCNpilot_expt_1000_bf_scaffold_5947_11
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7660..7971)
DNA (312bp) protein (104aa)
Hypothetical conserved protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYF6_POLGS
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ADZ68469.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_5947_12
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8050..8592)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPG9_9BRAD
Molybdenum cofactor biosysynthesis protein {ECO:0000313|EMBL:KFG67108.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5947_13
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8589..9035)
DNA (447bp) protein (149aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Thioesterase superfamily protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQ40_METS4
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_5947_14
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9054..9626)
DNA (573bp) protein (191aa)
16S rRNA-processing protein RimM n=1 Tax=Methylocystis rosea RepID=UPI000366E9B2
rimM; ribosome maturation factor RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_5947_15
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9626..9988)
DNA (363bp) protein (121aa)
30S ribosomal protein S16 n=1 Tax=Methylocystis rosea RepID=UPI00037D77ED
rpsP; 30S ribosomal protein S16 (RpsP)
30S ribosomal protein S16 {ECO:0000255|HAMAP-Rule:MF_00385}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_5947_16
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10069..10512)
DNA (444bp) protein (148aa)
Ffh, signal recognition particle protein n=1 Tax=Methyloferula stellata RepID=UPI000364BA76
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_5947_17].
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_5947_17
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10509..11006)
DNA (498bp) protein (166aa)
Ffh, signal recognition particle protein n=1 Tax=Methyloferula stellata RepID=UPI000364BA76
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Displaying 17 items

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