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SCNpilot_expt_1000_bf_scaffold_5996

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5996_1
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..502
DNA (501bp) protein (167aa)
SAM-dependent methyltransferase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000365D325
Type 11 methyltransferase {ECO:0000313|EMBL:EIZ86132.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
type 11 methyltransferase
SCNpilot_expt_1000_bf_scaffold_5996_2
unknown

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comp(559..744)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5996_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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899..1147
DNA (249bp) protein (83aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ85_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5996_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1316..1591)
DNA (276bp) protein (92aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLK1_9RHIZ
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EIM24843.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
beta-lactamase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_5996_5
unknown

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1924..2277
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5996_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2214..3254)
DNA (1041bp) protein (347aa)
N5,N10-methylenetetrahydromethanopterin reductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000349F077
Luciferase family oxidoreductase, group 1 {ECO:0000313|EMBL:EKS32560.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
luciferase-like protein
SCNpilot_expt_1000_bf_scaffold_5996_7
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3290..4006)
DNA (717bp) protein (239aa)
carbonate dehydratase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1] rbh
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
carbonate dehydratase n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003629529 rbh
SCNpilot_expt_1000_bf_scaffold_5996_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4223..5071
DNA (849bp) protein (283aa)
Putative citrate lyase beta chain protein CitE {ECO:0000313|EMBL:KFC63414.1}; EC=4.1.3.34 {ECO:0000313|EMBL:KFC63414.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
citryl-CoA lyase (EC:4.1.3.34); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
Citryl-CoA lyase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJ67_BEII9
SCNpilot_expt_1000_bf_scaffold_5996_9
bacterium YEK0313, Bacteria

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6021..6500
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037B47B0
Mitochondrial inner membrane protein {ECO:0000313|EMBL:CEJ16236.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5996_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6517..8118
DNA (1602bp) protein (534aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EA925A
Putative membrane-bound protein {ECO:0000313|EMBL:EIM25272.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
HemY domain-containing protein; K02498 HemY protein
SCNpilot_expt_1000_bf_scaffold_5996_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9131..11320
DNA (2190bp) protein (730aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N8L3_RHOPA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAE27331.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_expt_1000_bf_scaffold_5996_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12405..12818)
DNA (414bp) protein (138aa)
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8B9_STAND
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADH88592.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_5996_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12815..13216)
DNA (402bp) protein (134aa)
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8B9_STAND
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADH88592.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_5996_14
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14467..15756)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QMP2_9RHOB rbh
Soluble aldose sugar dehydrogenase {ECO:0000313|EMBL:ETX30320.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5996_15
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15814..16209)
DNA (396bp) protein (132aa)
Cytochrome c class I n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DH67_9GAMM
Cytochrome C {ECO:0000313|EMBL:ETX30321.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
putative cytochrome c
SCNpilot_expt_1000_bf_scaffold_5996_16
bacterium YEK0313, Bacteria

Not on your lists

comp(16462..18681)
DNA (2220bp) protein (740aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8S6_MESCW
Extracellular serine protease {ECO:0000313|EMBL:CEJ14645.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
outer membrane autotransporter barrel domain-containing protein
Displaying 16 items

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