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SCNpilot_expt_1000_bf_scaffold_4052

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4052_1
unknown

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2..133
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4052_2
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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450..1181
DNA (732bp) protein (244aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
2-dehydropantoate 2-reductase; K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJF1_9PROT
SCNpilot_expt_1000_bf_scaffold_4052_3
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1264..2478
DNA (1215bp) protein (405aa)
Putative ABC branched-chain amino transporter, periplasmic binding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TMI8_TISMK
putative ABC branched-chain amino transporter, periplasmic binding protein
Putative ABC branched-chain amino transporter, periplasmic binding protein {ECO:0000313|EMBL:AFK53976.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_4052_4
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2545..3309
DNA (765bp) protein (255aa)
ABC transporter related protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1V1_RHOVT
ABC transporter related protein {ECO:0000313|EMBL:KFB09998.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_4052_5
Loktanella hongkongensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3302..4009
DNA (708bp) protein (236aa)
histidinol dehydrogenase n=1 Tax=Loktanella hongkongensis RepID=UPI00035EC65B
Branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:EYD73632.1}; TaxID=1122180 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella hongkongensis DSM 17492.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_4052_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4022..4891
DNA (870bp) protein (290aa)
Putative branched-chain amino acid ABC transporter, permease component n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4P4_AZOL4
ABC transporter permease {ECO:0000313|EMBL:AIB11643.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative branched-chain amino acid ABC transporter, permease component; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4052_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4894..5892
DNA (999bp) protein (333aa)
Putative branched-chain amino acid ABC transporter, permease component n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4P5_AZOL4
putative branched-chain amino acid ABC transporter, permease component; K01998 branched-chain amino acid transport system permease protein
Putative branched-chain amino acid ABC transporter, permease component {ECO:0000313|EMBL:CBS86446.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_4052_8
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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6167..7660
DNA (1494bp) protein (498aa)
AMP-dependent synthetase/ligase; K12508 feruloyl-CoA synthase [EC:6.2.1.34]
feruloyl-CoA synthase n=1 Tax=Thalassospira lucentensis RepID=UPI0003B4DF32
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_4052_9
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8880..9593
DNA (714bp) protein (238aa)
prolidase (EC:3.4.13.9)
Prolidase {ECO:0000313|EMBL:ABI61938.1}; EC=3.4.13.9 {ECO:0000313|EMBL:ABI61938.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Prolidase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTB4_GRABC
SCNpilot_expt_1000_bf_scaffold_4052_10
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9659..10264)
DNA (606bp) protein (202aa)
Recombination protein RecR n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=RECR_METSB rbh
recombination protein RecR; K06187 recombination protein RecR rbh
Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_4052_11
bacterium YEK0313, Bacteria

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comp(10267..10590)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003747848
Nucleoid-associated protein BN1110_06171 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K09747 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4052_12
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10606..11274)
DNA (669bp) protein (223aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:ACK49253.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ACK49253.1};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037EA11E
SCNpilot_expt_1000_bf_scaffold_4052_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11217..12473)
DNA (1257bp) protein (419aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:ACK49253.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ACK49253.1};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
DNA polymerase III, subunits gamma and tau n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EP15_METSB
SCNpilot_expt_1000_bf_scaffold_4052_14
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12888..13823
DNA (936bp) protein (312aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22]
NUDIX hydrolase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EP14_METSB
NUDIX hydrolase {ECO:0000313|EMBL:ACK49252.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_4052_15
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13902..15014
DNA (1113bp) protein (371aa)
Putative glycosyl transferase 1 n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TMZ7_9BRAD
Putative glycosyl transferase 1 {ECO:0000313|EMBL:CCE07835.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
group 1 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_4052_16
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15162..15395)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003123D32
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ADG12187.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_4052_17
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15490..16011
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JUD0_BURP1
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CRE28087.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_4052_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16155..17306
DNA (1152bp) protein (384aa)
ceramide glucosyltransferase; K00720 ceramide glucosyltransferase [EC:2.4.1.80]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000372AB4C rbh
Ceramide glucosyltransferase {ECO:0000313|EMBL:CDX15288.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_4052_19
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17399..18895
DNA (1497bp) protein (499aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] rbh
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IML5_AZOC5 rbh
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:BAF86573.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_4052_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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19012..19818
DNA (807bp) protein (269aa)
Alpha/beta hydrolase fold protein id=1735156 bin=GWD2_Deltaproteobacteria_55_8 species=Bhargavaea cecembensis genus=Bhargavaea taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
dienelactone hydrolase family protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
SCNpilot_expt_1000_bf_scaffold_4052_21
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19815..20828)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. RPE64 RepID=R4WRN4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:BAO92160.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4052_22
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20825..22738)
DNA (1914bp) protein (638aa)
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QDK1_ACIAP
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_1000_bf_scaffold_4052_23
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22738..23220)
DNA (483bp) protein (161aa)
5-oxoprolinase (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14]
5-oxoprolinase n=1 Tax=Curvibacter lanceolatus RepID=UPI0003768BC5
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_4052_24
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23259..23633)
DNA (375bp) protein (125aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0M6_VARPS
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_1000_bf_scaffold_4052_25
unknown

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23772..24029
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4052_26
unknown

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24939..25112
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 26 items

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