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SCNpilot_expt_1000_bf_scaffold_7308

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7308_1
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1512)
DNA (1512bp) protein (504aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
transcription-repair coupling factor n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037B18FD
SCNpilot_expt_1000_bf_scaffold_7308_2
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1546..1842)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00034D0BE9
Protein of unassigned function {ECO:0000313|EMBL:AIQ89793.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
hypothetical protein; K09159 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7308_3
unknown

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comp(2106..2663)
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7308_4

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comp(2895..3257)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1WWS2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD22085.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_7308_5
unknown

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comp(3264..3596)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7308_6
unknown

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comp(3663..3980)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7308_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4172..4861
DNA (690bp) protein (230aa)
Isochorismatase hydrolase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V7Y1_SPHWW rbh
isochorismatase hydrolase rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:ABQ68397.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_7308_8
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4858..5619)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036F4232 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACK50229.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_7308_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5831..6472
DNA (642bp) protein (214aa)
ABC transporter related protein {ECO:0000313|EMBL:KFC70021.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_7308_10
bacterium YEK0313, Bacteria

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6655..7608
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00036BD83F
Inner membrane ABC transporter ATP-binding protein YddA {ECO:0000313|EMBL:CEJ12354.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein; K02471 putative ATP-binding cassette transporter
SCNpilot_expt_1000_bf_scaffold_7308_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7635..8210
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) RepID=B4EGK7_BURCJ
Uncharacterized protein {ECO:0000313|EMBL:KFC70019.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7308_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8253..10079)
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_0016
glucosamine--fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] rbh
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003673488 rbh
SCNpilot_expt_1000_bf_scaffold_7308_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10186..11307)
DNA (1122bp) protein (374aa)
glucosamine-1-phosphate N-acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
Bifunctional protein GlmU n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=GLMU_AZOC5
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Displaying 13 items

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