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SCNpilot_expt_1000_bf_scaffold_6254

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6254_1
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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481..930
DNA (450bp) protein (150aa)
Putative hydroxybenzoate transporter membrane potein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RWU4_9BRAD
Putative hydroxybenzoate transporter membrane potein {ECO:0000313|EMBL:CCD86421.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hydroxybenzoate transporter
SCNpilot_expt_1000_bf_scaffold_6254_2
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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957..2171
DNA (1215bp) protein (405aa)
vanA; vanillate monooxygenase (EC:1.14.13.82); K03862 vanillate monooxygenase [EC:1.14.13.82]
Vanillate O-demethylase oxygenase, iron-sulfur subunit (Modular protein=subunit from monooxygenase) (VanA-like) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTH1_9BRAD
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_1000_bf_scaffold_6254_3
unknown

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comp(2840..3199)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6254_4
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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3654..4394
DNA (741bp) protein (247aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_6254_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4378..5493)
DNA (1116bp) protein (372aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WQV2_COMTE
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:EED67097.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
alcohol dehydrogenase GroES domain protein
SCNpilot_expt_1000_bf_scaffold_6254_6
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5493..6785)
DNA (1293bp) protein (431aa)
Rieske (2Fe-2S) region n=1 Tax=Burkholderia sp. YI23 RepID=G8MNF1_9BURK
Rieske 2Fe-2S region {ECO:0000313|EMBL:BAO92177.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
Rieske (2Fe-2S) protein
SCNpilot_expt_1000_bf_scaffold_6254_7

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7040..8086
DNA (1047bp) protein (349aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium B7P37metaSE RepID=C8CIK4_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACV30048.1}; TaxID=670783 species="Bacteria; environmental samples.;" source="uncultured bacterium B7P37metaSE.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6254_8
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8182..9072)
DNA (891bp) protein (297aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2JUC1_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EUB99162.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6254_9

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9364..9891
DNA (528bp) protein (176aa)
Staphylococcus-like nuclease n=1 Tax=uncultured bacterium RepID=Q2VNR4_9BACT
Staphylococcus-like nuclease {ECO:0000313|EMBL:CAJ01565.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_6254_10
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9941..10234
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037132C1
nuclease
Nuclease (SNase domain protein) {ECO:0000313|EMBL:ACK50326.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_6254_11
unknown

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10345..11715
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035C8778 rbh
Membrane bound O-acyl transferase MBOAT family protein {ECO:0000313|EMBL:CPR17511.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
membrane bound O-acyl transferase MBOAT family protein rbh
SCNpilot_expt_1000_bf_scaffold_6254_12
unknown

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11732..12820
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035D5760
Uncharacterized protein {ECO:0000313|EMBL:CPR16397.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6254_13
Methylocapsa acidiphila, Methylocapsa, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12991..14565
DNA (1575bp) protein (525aa)
Putative zinc metallopeptidase n=1 Tax=Methylocapsa acidiphila RepID=Q2VNL8_METAI rbh
Putative zinc metallopeptidase {ECO:0000313|EMBL:CAJ01614.1}; TaxID=133552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocapsa.;" source="Methylocapsa acidiphila.;"
peptidase M48 Ste24p rbh
SCNpilot_expt_1000_bf_scaffold_6254_14
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14649..16016)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003714141 rbh
CarD family transcriptional regulator rbh
CarD family transcriptional regulator {ECO:0000313|EMBL:CCJ05857.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_6254_15
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16478..16816)
DNA (339bp) protein (113aa)
Ferredoxin n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMG2_9RHIZ
Ferredoxin {ECO:0000313|EMBL:EIM25154.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
4Fe-4S ferredoxin; K05524 ferredoxin
SCNpilot_expt_1000_bf_scaffold_6254_16
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16927..17328)
DNA (402bp) protein (134aa)
RNA-binding S4 domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TN43_MESCW
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15
RNA-binding S4 domain protein {ECO:0000313|EMBL:ADV10486.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_6254_17
unknown

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comp(17325..17432)
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying 17 items

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