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SCNpilot_expt_1000_bf_scaffold_6445

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6445_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..456
DNA (456bp) protein (152aa)
Ribosome maturation factor RimP n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DJ45_BRAJP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein; K09748 ribosome maturation factor RimP
SCNpilot_expt_1000_bf_scaffold_6445_2
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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460..2064
DNA (1605bp) protein (535aa)
Transcription termination protein NusA n=1 Tax=Rhodovulum sp. PH10 RepID=J6UA71_9RHOB
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
nusA; transcription elongation protein NusA; K02600 N utilization substance protein A
SCNpilot_expt_1000_bf_scaffold_6445_3
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2411..2800
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EIA8_METSB
hypothetical protein; K07742 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK51227.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_6445_4
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2833..5505
DNA (2673bp) protein (891aa)
translation initiation factor IF-2 n=1 Tax=Methyloferula stellata RepID=UPI0003679126 rbh
translation initiation factor IF-2; K02519 translation initiation factor IF-2 rbh
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_6445_5
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5608..6087
DNA (480bp) protein (160aa)
Ribosome-binding factor A n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=RBFA_METSB
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
Ribosome-binding factor A {ECO:0000255|HAMAP-Rule:MF_00003}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_6445_6
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6089..6994
DNA (906bp) protein (302aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] rbh
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
tRNA pseudouridine synthase B n=1 Tax=Methylosinus sp. LW4 RepID=UPI000365AB51 rbh
SCNpilot_expt_1000_bf_scaffold_6445_7
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7074..7358
DNA (285bp) protein (95aa)
peptide-binding protein n=1 Tax=Methylocystis parvus RepID=UPI00035DBCE5
hypothetical protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_6445_8
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7579..7815
DNA (237bp) protein (79aa)
30S ribosomal protein S15 n=1 Tax=Methylocystis parvus RepID=UPI0003006027
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_6445_9
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8012..10177
DNA (2166bp) protein (722aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595, ECO:0000313|EMBL:CCJ07215.1};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) rbh
polynucleotide phosphorylase n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003791D6A rbh
SCNpilot_expt_1000_bf_scaffold_6445_10
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10239..10952)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003701D61
Uncharacterized protein {ECO:0000313|EMBL:EAT07529.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
conserved membrane hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6445_11
unknown

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11357..11500
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6445_12
unknown

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11500..12036
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6445_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12097..13020)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VCW0_RHOPX
Uncharacterized protein {ECO:0000313|EMBL:KIZ43185.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6445_14
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13213..14325
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI000371B27D
Glycosyltransferase family 2 protein {ECO:0000313|EMBL:AJD39659.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
putative glycosyl transferase, family 2
SCNpilot_expt_1000_bf_scaffold_6445_15
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14512..14970)
DNA (459bp) protein (153aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
short-chain dehydrogenase/reductase SDR; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
enoyl-ACP reductase n=1 Tax=Xanthobacteraceae RepID=UPI00037528E7
Displaying 15 items

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