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SCNpilot_expt_1000_bf_scaffold_6714

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6714_1
bacterium YEK0313, Bacteria

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comp(1..327)
DNA (327bp) protein (109aa)
Transcriptional regulator, LuxR family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3J6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ10849.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6714_2
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1029..1922
DNA (894bp) protein (298aa)
Outer membrane protein Omp31 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8INA9_AZOC5
outer membrane protein Omp31
Outer membrane protein Omp31 {ECO:0000313|EMBL:BAF89725.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_6714_3
unknown

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2025..3092
DNA (1068bp) protein (356aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6714_4
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3108..4550)
DNA (1443bp) protein (481aa)
amidohydrolase; K12960 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
Amidohydrolase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1RYJ3_9BURK rbh
Amidohydrolase {ECO:0000313|EMBL:EHP44684.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
SCNpilot_expt_1000_bf_scaffold_6714_5
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4580..5377)
DNA (798bp) protein (266aa)
Putative aliphatic sulfonates transport permease protein ssuC n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7M7_HYPSM rbh
aliphatic sulfonates transport permease ssuC rbh
Putative aliphatic sulfonates transport permease protein ssuC {ECO:0000313|EMBL:CCB63500.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6714_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5374..6174)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7M6_HYPSM
hypothetical protein; K02049 NitT/TauT family transport system ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:CCB63499.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6714_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6346..6894
DNA (549bp) protein (183aa)
HTH-type transcriptional regulator PecS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYG8_9RHIZ
HTH-type transcriptional regulator PecS {ECO:0000313|EMBL:EYR83649.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MarR transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6714_8
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6920..7183)
DNA (264bp) protein (88aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UC61_METS4
Crp/FNR family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACA15495.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_6714_9
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7741..7875)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7C812_METED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX21941.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
Displaying 9 items

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