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SCNPILOT_CONT_300_BF_Rhizobiales_61_16

SCNPILOT_EXPT_1000_BF_Rhizobiales_61_5
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 4.77 Longest contig: 25.11 Kbp Bin length: 4.64 Mbp GC content: 60.72 %
Contigs count: 913 Features count: 5488 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Displaying items 801-850 of 913 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_33831
Species: Bosea sp. LC85 (50%)
2 1348 bp 63.72 4.08 99.70
SCNpilot_expt_1000_bf_scaffold_37913
Species: R_Alphaproteobacteria_66_14 (50%)
2 1228 bp 63.76 5.29 99.92
SCNpilot_expt_1000_bf_scaffold_25898
Species: Sphaerobacter thermophilus (50%)
2 1686 bp 62.81 5.63 86.12
SCNpilot_expt_1000_bf_scaffold_28212
Species: Ralstonia sp. GA3-3 (50%)
2 1571 bp 65.44 3.82 98.92
SCNpilot_expt_1000_bf_scaffold_52933
Species: Roseomonas cervicalis (50%)
2 1424 bp 60.67 4.92 67.84
SCNpilot_expt_1000_bf_scaffold_14483
Species: bacterium YEK0313 (50%)
2 2745 bp 59.42 5.10 58.47
SCNpilot_expt_1000_bf_scaffold_22261
Species: Parvibaculum lavamentivorans (50%)
2 1918 bp 61.99 5.47 93.07
SCNpilot_expt_1000_bf_scaffold_19694
Species: Bradyrhizobium sp. STM 3843 (50%)
2 2125 bp 58.92 4.24 88.66
SCNpilot_expt_1000_bf_scaffold_40257
Species: bacterium YEK0313 (50%)
2 1161 bp 61.41 4.09 98.97
SCNpilot_expt_1000_bf_scaffold_42579
Species: Methylocystis sp. SC2 (50%)
2 1092 bp 63.28 3.89 90.66
SCNpilot_expt_1000_bf_scaffold_31180
Species: Burkholderia thailandensis (50%)
2 1443 bp 58.00 4.68 80.67
SCNpilot_expt_1000_bf_scaffold_27623
Species: Microvirga lotononidis (50%)
2 1598 bp 59.95 4.22 94.99
SCNpilot_expt_1000_bf_scaffold_37170
Species: Bradyrhizobium sp. DFCI-1 (50%)
2 1962 bp 59.68 4.08 101.68
SCNpilot_expt_1000_bf_scaffold_38260
Species: Ramlibacter tataouinensis (50%)
2 1218 bp 54.19 3.69 86.45
SCNpilot_expt_1000_bf_scaffold_15831
Species: Microvirga lotononidis (50%)
2 2549 bp 61.12 6.28 94.04
SCNpilot_expt_1000_bf_scaffold_45827
Species: Cupriavidus sp. SK-3 (50%)
2 1653 bp 60.13 3.93 82.76
SCNpilot_expt_1000_bf_scaffold_43827
Species: Afipia sp. P52-10 (50%)
2 1055 bp 60.76 4.74 91.56
SCNpilot_expt_1000_bf_scaffold_40533
Species: Rhodovulum sp. PH10 (100%)
2 1153 bp 60.10 2.82 81.70
SCNpilot_expt_1000_bf_scaffold_25167
Species: Methylocystis sp. SC2 (50%)
2 2303 bp 62.35 4.99 69.04
SCNpilot_expt_1000_bf_scaffold_44258
Species: Pseudomonas sp. CF161 (50%)
2 1042 bp 58.16 4.32 87.52
SCNpilot_expt_1000_bf_scaffold_27903
Species: bacterium YEK0313 (50%)
2 1585 bp 61.77 2.84 99.75
SCNpilot_expt_1000_bf_scaffold_36244
Species: Beijerinckia indica (50%)
2 1275 bp 57.41 3.73 73.18
SCNpilot_expt_1000_bf_scaffold_11661
Species: Sphingobium chlorophenolicum (50%)
2 3791 bp 59.77 5.21 98.92
SCNpilot_expt_1000_bf_scaffold_43078
Species: RLO_Betaproteobacteria_65_14 (50%)
2 1474 bp 59.02 2.88 95.86
SCNpilot_expt_1000_bf_scaffold_19737
Species: Afipia broomeae (50%)
2 2121 bp 61.53 4.83 81.05
SCNpilot_expt_1000_bf_scaffold_45235
Species: Mesorhizobium sp. L2C066B000 (50%)
2 1012 bp 59.58 2.47 71.44
SCNpilot_expt_1000_bf_scaffold_25956
Species: Methylocella silvestris (50%)
2 1683 bp 65.18 4.16 95.01
SCNpilot_expt_1000_bf_scaffold_19996
Species: Burkholderia multivorans (50%)
2 2098 bp 62.87 5.72 93.80
SCNpilot_expt_1000_bf_scaffold_21214
Species: R_Betaproteobacteria_65_24 (50%)
2 1998 bp 60.66 5.38 74.32
SCNpilot_expt_1000_bf_scaffold_26583
Species: Methylobacterium nodulans (50%)
2 1650 bp 60.91 5.61 78.00
SCNpilot_expt_1000_bf_scaffold_31739
Species: Mesorhizobium sp. ORS3359 (50%)
2 1421 bp 63.34 3.52 98.80
SCNpilot_expt_1000_bf_scaffold_43861
Species: R_Betaproteobacteria_63_19 (50%)
2 1406 bp 61.52 4.98 82.79
SCNpilot_expt_1000_bf_scaffold_35000
Species: Microvirga aerilata (50%)
2 2174 bp 60.30 2.87 67.62
SCNpilot_expt_1000_bf_scaffold_18521
Species: Methylocella silvestris (50%)
2 2236 bp 63.28 3.91 99.96
SCNpilot_expt_1000_bf_scaffold_19500
Species: Microvirga aerilata (50%)
2 2142 bp 62.84 4.67 90.62
SCNpilot_expt_1000_bf_scaffold_65206
Species: Microvirga aerilata (50%)
2 1096 bp 61.13 3.65 98.81
SCNpilot_expt_1000_bf_scaffold_39458
Species: Staphylococcus aureus (50%)
2 1605 bp 61.06 5.61 94.77
SCNpilot_expt_1000_bf_scaffold_30671
Species: Comamonas testosteroni (50%)
2 1463 bp 59.88 2.73 100.27
SCNpilot_expt_1000_bf_scaffold_17802
Species: Bradyrhizobium sp. S23321 (50%)
2 2316 bp 60.79 4.43 99.61
SCNpilot_expt_1000_bf_scaffold_18037
Species: Mesorhizobium sp. LSJC280B00 (100%)
2 2289 bp 64.83 3.71 95.02
SCNpilot_expt_1000_bf_scaffold_34494
Species: RLO_Betaproteobacteria_68_20 (50%)
2 1326 bp 65.16 3.96 87.56
SCNpilot_expt_1000_bf_scaffold_23071
Species: R_Acidobacteria_68_18 (50%)
2 3089 bp 58.79 4.53 64.00
SCNpilot_expt_1000_bf_scaffold_38591
Species: Devosia sp. DDB001 (100%)
2 1209 bp 62.53 3.52 92.31
SCNpilot_expt_1000_bf_scaffold_26112
Species: Saccharopolyspora rectivirgula (50%)
2 1674 bp 61.71 5.68 78.14
SCNpilot_expt_1000_bf_scaffold_32401
Species: Afipia sp. P52-10 (50%)
2 2148 bp 53.91 3.49 55.73
SCNpilot_expt_1000_bf_scaffold_28058
Species: Bradyrhizobium diazoefficiens (50%)
2 1578 bp 61.79 3.49 96.01
SCNpilot_expt_1000_bf_scaffold_49358
Species: Methylocapsa acidiphila (50%)
2 1487 bp 59.18 4.20 96.64
SCNpilot_expt_1000_bf_scaffold_38595
Species: Microvirga aerilata (50%)
2 1897 bp 53.93 3.95 63.26
SCNpilot_expt_1000_bf_scaffold_43388
Species: Mesorhizobium sp. LSJC280B00 (50%)
2 1067 bp 64.48 4.45 80.97
SCNpilot_expt_1000_bf_scaffold_30436
Species: Mesorhizobium sp. ORS3324 (50%)
2 1472 bp 58.42 4.42 100.88
Displaying items 801-850 of 913 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.