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SCNPILOT_CONT_300_BF_Rhizobiales_61_16

SCNPILOT_EXPT_1000_BF_Rhizobiales_61_5
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 4.77 Longest contig: 25.11 Kbp Bin length: 4.64 Mbp GC content: 60.72 %
Contigs count: 913 Features count: 5488 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Displaying items 1-50 of 913 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_4052
Class: Alphaproteobacteria (57.69%)
26 25112 bp 61.72 5.71 83.48
SCNpilot_expt_1000_bf_scaffold_9096
Class: Alphaproteobacteria (60%)
25 22495 bp 58.76 4.70 81.23
SCNpilot_expt_1000_bf_scaffold_12711
Domain: Bacteria (72%)
25 18818 bp 59.77 4.84 77.94
SCNpilot_expt_1000_bf_scaffold_2830
Order: Rhizobiales (80%)
25 22009 bp 61.73 5.10 87.03
SCNpilot_expt_1000_bf_scaffold_4750
Order: Rhizobiales (72%)
25 20893 bp 62.08 5.00 86.21
SCNpilot_expt_1000_bf_scaffold_8024
Order: Rhizobiales (54.55%)
22 13392 bp 59.86 4.61 78.05
SCNpilot_expt_1000_bf_scaffold_3895
Order: Rhizobiales (72.73%)
22 20324 bp 62.23 5.15 84.08
SCNpilot_expt_1000_bf_scaffold_7888
Order: Rhizobiales (50%)
22 20709 bp 61.32 5.17 82.56
SCNpilot_expt_1000_bf_scaffold_5582
Order: Rhizobiales (63.64%)
22 20530 bp 60.48 4.26 77.87
SCNpilot_expt_1000_bf_scaffold_9885 21 13036 bp 63.45 4.16 82.23
SCNpilot_expt_1000_bf_scaffold_4967
Order: Rhizobiales (70%)
20 19198 bp 62.64 5.55 87.48
SCNpilot_expt_1000_bf_scaffold_4506
Phylum: Proteobacteria (57.89%)
19 17364 bp 59.70 4.66 82.27
SCNpilot_expt_1000_bf_scaffold_7821
Phylum: Proteobacteria (68.42%)
19 20705 bp 61.67 4.79 76.20
SCNpilot_expt_1000_bf_scaffold_8005
Class: Alphaproteobacteria (57.89%)
19 17315 bp 62.15 4.65 92.80
SCNpilot_expt_1000_bf_scaffold_6112
Order: Rhizobiales (78.95%)
19 22400 bp 61.27 4.89 82.78
SCNpilot_expt_1000_bf_scaffold_2563
Class: Alphaproteobacteria (52.63%)
19 18581 bp 63.22 5.60 89.79
SCNpilot_expt_1000_bf_scaffold_5666
Class: Alphaproteobacteria (50%)
18 15210 bp 58.86 4.45 85.70
SCNpilot_expt_1000_bf_scaffold_2530
Order: Rhizobiales (50%)
18 11780 bp 56.61 4.29 82.56
SCNpilot_expt_1000_bf_scaffold_6389
Class: Alphaproteobacteria (50%)
18 19138 bp 60.57 5.12 84.85
SCNpilot_expt_1000_bf_scaffold_5947
Order: Rhizobiales (76.47%)
17 11007 bp 62.12 5.50 89.21
SCNpilot_expt_1000_bf_scaffold_4942
Order: Rhizobiales (52.94%)
17 14261 bp 62.56 5.10 79.56
SCNpilot_expt_1000_bf_scaffold_2129
Phylum: Proteobacteria (64.71%)
17 15628 bp 62.09 5.34 84.85
SCNpilot_expt_1000_bf_scaffold_6254
Phylum: Proteobacteria (64.71%)
17 17434 bp 61.46 5.32 81.38
SCNpilot_expt_1000_bf_scaffold_10481
Class: Alphaproteobacteria (64.71%)
17 11867 bp 59.53 4.40 82.44
SCNpilot_expt_1000_bf_scaffold_8724
Order: Rhizobiales (68.75%)
16 12496 bp 62.77 4.24 94.42
SCNpilot_expt_1000_bf_scaffold_3348
Order: Rhizobiales (68.75%)
16 12954 bp 59.68 4.59 80.57
SCNpilot_expt_1000_bf_scaffold_5405
Class: Alphaproteobacteria (68.75%)
16 12633 bp 59.70 4.81 84.02
SCNpilot_expt_1000_bf_scaffold_4294
Order: Rhizobiales (93.75%)
16 15028 bp 62.82 4.76 90.35
SCNpilot_expt_1000_bf_scaffold_5996
Order: Rhizobiales (62.5%)
16 18681 bp 60.25 4.79 70.48
SCNpilot_expt_1000_bf_scaffold_2913
Phylum: Proteobacteria (62.5%)
16 18514 bp 59.33 4.90 82.85
SCNpilot_expt_1000_bf_scaffold_5832
Order: Rhizobiales (87.5%)
16 12177 bp 59.67 5.42 79.58
SCNpilot_expt_1000_bf_scaffold_6805
Class: Alphaproteobacteria (53.33%)
15 10078 bp 59.34 4.61 87.82
SCNpilot_expt_1000_bf_scaffold_3073
Order: Rhizobiales (53.33%)
15 12925 bp 61.53 4.91 91.38
SCNpilot_expt_1000_bf_scaffold_4806
Order: Rhizobiales (60%)
15 13765 bp 59.73 4.56 80.90
SCNpilot_expt_1000_bf_scaffold_10085 15 8940 bp 59.72 3.86 76.41
SCNpilot_expt_1000_bf_scaffold_5952
Order: Rhizobiales (93.33%)
15 6603 bp 61.79 5.49 91.10
SCNpilot_expt_1000_bf_scaffold_11652
Phylum: Proteobacteria (73.33%)
15 10542 bp 57.59 4.24 76.07
SCNpilot_expt_1000_bf_scaffold_3683
Order: Rhizobiales (80%)
15 15161 bp 61.00 4.32 86.93
SCNpilot_expt_1000_bf_scaffold_9451
Order: Rhizobiales (60%)
15 9539 bp 65.17 5.87 93.19
SCNpilot_expt_1000_bf_scaffold_6677
Order: Rhizobiales (66.67%)
15 11887 bp 62.19 4.08 82.73
SCNpilot_expt_1000_bf_scaffold_9735
Order: Rhizobiales (66.67%)
15 13009 bp 60.94 5.02 86.22
SCNpilot_expt_1000_bf_scaffold_6445
Order: Rhizobiales (73.33%)
15 14970 bp 63.77 5.44 87.43
SCNpilot_expt_1000_bf_scaffold_11186
Class: Alphaproteobacteria (60%)
15 11137 bp 61.52 4.22 75.34
SCNpilot_expt_1000_bf_scaffold_4735
Order: Rhizobiales (66.67%)
15 14267 bp 61.24 5.10 90.59
SCNpilot_expt_1000_bf_scaffold_9832
Phylum: Proteobacteria (73.33%)
15 13474 bp 60.60 4.14 85.61
SCNpilot_expt_1000_bf_scaffold_6125
Order: Rhizobiales (64.29%)
14 10135 bp 62.51 4.24 91.08
SCNpilot_expt_1000_bf_scaffold_7371
Class: Alphaproteobacteria (50%)
14 13252 bp 61.15 4.81 85.28
SCNpilot_expt_1000_bf_scaffold_9437
Order: Rhizobiales (64.29%)
14 10517 bp 62.15 4.28 81.58
SCNpilot_expt_1000_bf_scaffold_7133
Class: Betaproteobacteria (71.43%)
14 13865 bp 60.64 5.37 90.42
SCNpilot_expt_1000_bf_scaffold_7909
Order: Rhizobiales (64.29%)
14 14332 bp 59.75 4.88 86.58
Displaying items 1-50 of 913 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.