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SCNPILOT_CONT_300_BF_Rhizobiales_61_16

SCNPILOT_EXPT_1000_BF_Rhizobiales_61_5
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 4.77 Longest contig: 25.11 Kbp Bin length: 4.64 Mbp GC content: 60.72 %
Contigs count: 913 Features count: 5488 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Displaying items 51-100 of 913 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_9208
Order: Rhizobiales (57.14%)
14 11219 bp 59.48 4.63 84.07
SCNpilot_expt_1000_bf_scaffold_8624
Class: Alphaproteobacteria (50%)
14 13422 bp 60.46 4.27 83.66
SCNpilot_expt_1000_bf_scaffold_7451
Order: Rhizobiales (71.43%)
14 10993 bp 60.67 4.80 93.88
SCNpilot_expt_1000_bf_scaffold_3534
Phylum: Proteobacteria (50%)
14 10229 bp 60.00 4.94 81.94
SCNpilot_expt_1000_bf_scaffold_8962
Phylum: Proteobacteria (71.43%)
14 10553 bp 60.39 4.67 93.07
SCNpilot_expt_1000_bf_scaffold_5604 14 13117 bp 60.82 4.35 85.56
SCNpilot_expt_1000_bf_scaffold_7308
Order: Rhizobiales (53.85%)
13 11307 bp 62.30 4.40 88.03
SCNpilot_expt_1000_bf_scaffold_6359
Class: Alphaproteobacteria (76.92%)
13 10832 bp 62.72 5.79 84.67
SCNpilot_expt_1000_bf_scaffold_9152
Order: Rhizobiales (69.23%)
13 11099 bp 62.33 5.32 86.03
SCNpilot_expt_1000_bf_scaffold_5712
Phylum: Proteobacteria (61.54%)
13 18248 bp 62.53 4.97 84.24
SCNpilot_expt_1000_bf_scaffold_10879
Order: Rhizobiales (69.23%)
13 8890 bp 59.49 4.33 89.66
SCNpilot_expt_1000_bf_scaffold_7636
Order: Rhizobiales (76.92%)
13 9882 bp 59.98 5.16 87.77
SCNpilot_expt_1000_bf_scaffold_8581
Order: Rhizobiales (69.23%)
13 12060 bp 60.83 5.14 75.25
SCNpilot_expt_1000_bf_scaffold_8377
Domain: Bacteria (53.85%)
13 8627 bp 58.66 4.55 83.25
SCNpilot_expt_1000_bf_scaffold_4154
Order: Rhizobiales (92.31%)
13 12390 bp 62.49 5.57 90.41
SCNpilot_expt_1000_bf_scaffold_5274
Class: Alphaproteobacteria (53.85%)
13 9909 bp 61.18 4.79 84.62
SCNpilot_expt_1000_bf_scaffold_9525
Order: Rhizobiales (84.62%)
13 8195 bp 59.73 4.30 90.71
SCNpilot_expt_1000_bf_scaffold_9272
Order: Rhizobiales (69.23%)
13 8829 bp 61.06 5.07 83.86
SCNpilot_expt_1000_bf_scaffold_13153
Order: Rhizobiales (61.54%)
13 12167 bp 59.55 5.30 72.34
SCNpilot_expt_1000_bf_scaffold_10505
Order: Rhizobiales (76.92%)
13 11157 bp 60.76 4.59 76.93
SCNpilot_expt_1000_bf_scaffold_6545
Class: Alphaproteobacteria (53.85%)
13 11409 bp 60.71 4.78 85.35
SCNpilot_expt_1000_bf_scaffold_5100
Order: Rhizobiales (83.33%)
12 10334 bp 59.43 5.49 68.69
SCNpilot_expt_1000_bf_scaffold_7793
Class: Gammaproteobacteria (50%)
12 7966 bp 60.73 4.27 94.75
SCNpilot_expt_1000_bf_scaffold_15750
Order: Rhizobiales (91.67%)
12 9795 bp 60.18 5.21 77.12
SCNpilot_expt_1000_bf_scaffold_12640
Phylum: Proteobacteria (50%)
12 10484 bp 60.65 4.58 91.57
SCNpilot_expt_1000_bf_scaffold_10537
Order: Rhizobiales (75%)
12 11127 bp 64.54 5.44 86.22
SCNpilot_expt_1000_bf_scaffold_8539
Order: Rhizobiales (100%)
12 12302 bp 62.67 4.33 93.59
SCNpilot_expt_1000_bf_scaffold_4067
Class: Alphaproteobacteria (58.33%)
12 9590 bp 61.51 4.87 83.77
SCNpilot_expt_1000_bf_scaffold_7096
Order: Rhizobiales (58.33%)
12 10373 bp 61.20 4.89 87.89
SCNpilot_expt_1000_bf_scaffold_13027
Order: Rhizobiales (58.33%)
12 7655 bp 60.69 5.85 79.71
SCNpilot_expt_1000_bf_scaffold_15563
Order: Rhizobiales (83.33%)
12 9628 bp 61.32 4.91 84.75
SCNpilot_expt_1000_bf_scaffold_10130
Order: Rhizobiales (66.67%)
12 12195 bp 62.90 4.78 90.04
SCNpilot_expt_1000_bf_scaffold_6179 12 8278 bp 63.22 5.38 79.55
SCNpilot_expt_1000_bf_scaffold_13085
Order: Rhizobiales (50%)
12 11115 bp 59.29 4.90 81.73
SCNpilot_expt_1000_bf_scaffold_6704
Phylum: Proteobacteria (75%)
12 12291 bp 61.61 4.88 88.87
SCNpilot_expt_1000_bf_scaffold_3785
Order: Rhizobiales (50%)
12 9978 bp 62.39 4.79 93.24
SCNpilot_expt_1000_bf_scaffold_6529
Class: Betaproteobacteria (50%)
12 10914 bp 60.81 4.56 85.68
SCNpilot_expt_1000_bf_scaffold_3293
Species: Bosea sp. LC85 (50%)
12 9533 bp 63.10 4.46 86.82
SCNpilot_expt_1000_bf_scaffold_7018
Order: Rhizobiales (54.55%)
11 13233 bp 60.44 5.33 69.33
SCNpilot_expt_1000_bf_scaffold_16321 11 6802 bp 61.60 4.34 85.25
SCNpilot_expt_1000_bf_scaffold_7036
Order: Rhizobiales (81.82%)
11 11059 bp 59.95 4.68 74.76
SCNpilot_expt_1000_bf_scaffold_12135
Order: Rhizobiales (54.55%)
11 7028 bp 59.15 4.62 68.00
SCNpilot_expt_1000_bf_scaffold_9364
Class: Alphaproteobacteria (54.55%)
11 10253 bp 60.72 4.66 90.09
SCNpilot_expt_1000_bf_scaffold_4295
Order: Rhizobiales (81.82%)
11 7374 bp 60.55 4.75 82.26
SCNpilot_expt_1000_bf_scaffold_8783
Order: Rhizobiales (54.55%)
11 8800 bp 61.17 4.46 86.90
SCNpilot_expt_1000_bf_scaffold_3627
Order: Rhizobiales (81.82%)
11 11737 bp 62.95 5.71 90.30
SCNpilot_expt_1000_bf_scaffold_7597
Phylum: Proteobacteria (81.82%)
11 9419 bp 60.94 5.12 91.16
SCNpilot_expt_1000_bf_scaffold_7863
Domain: Bacteria (72.73%)
11 6416 bp 61.55 4.71 87.53
SCNpilot_expt_1000_bf_scaffold_8576
Phylum: Proteobacteria (63.64%)
11 7630 bp 60.71 4.98 80.72
SCNpilot_expt_1000_bf_scaffold_12218
Phylum: Proteobacteria (63.64%)
11 7049 bp 57.74 4.82 71.50
Displaying items 51-100 of 913 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.